________________________________________
From: [email protected] [[email protected]] On Behalf Of
Joachim Baran [[email protected]]
Sent: Tuesday, February 01, 2011 3:20 PM
To: Greenman, Ronald (NIH/CIT) [C]
Cc: [email protected]; [email protected]
Subject: Re: [BioMart Users] PRIDE and BioMart: Filtering Problems
Hi!
On 28 January 2011 10:05, Greenman, Ronald (NIH/CIT) [C]
<[email protected]> wrote:
> I'm running a locally installed PRIDE/BioMart combination, using the
> configuration offered by PRIDE at
> <http://sourceforge.net/projects/pride-proteome/files/>.
The files on SourceForge seem to be outdated by a couple of years
now. You can access a current version of the PRIDE BioMart via
http://www.ebi.ac.uk/pride/prideMart.do
Whilst you can run your own BioMart locally, I suggest that you also
have a look at querying the PRIDE BioMart at EBI. You can submit
queries manually via the web-interface or you can submit queries
programmatically via the XML/RESTful-interface or via the Perl API.
Hope that helps.
Joachim
just to add to Joachim message:
probably the best starting point is www.biomart.org. It contains all the
publicly available marts (that we know of) :)
a
_______________________________________________
Users mailing list
[email protected]
https://lists.biomart.org/mailman/listinfo/users
_______________________________________________
Users mailing list
[email protected]
https://lists.biomart.org/mailman/listinfo/users
