I'm sorry that I haven't been able to reply sooner. I was pulled off to other tasks at work, and I'm only now able to get back to this.
Unfortunately, my project requires me to run PRIDE/BioMart locally. I'm now using the config files from PRIDE's Google Code repository, so those should in theory be up to date, though I notice that they haven't been updated in a long time either. However, the problem remains. In particular, the only Sample Attribute I can filter on is Species, even though the configuration seems to also offer filters on Tissue, Cell Type, GO, and Disease. The attributes appear to work normally when displayed in query results; I just can't filter on them. What would cause an attribute to be viewable, but not filterable? -----Original Message----- From: Joachim Baran [mailto:[email protected]] Sent: Tuesday, February 01, 2011 3:21 PM To: Greenman, Ronald (NIH/CIT) [C] Cc: [email protected]; [email protected] Subject: Re: [BioMart Users] PRIDE and BioMart: Filtering Problems Hi! On 28 January 2011 10:05, Greenman, Ronald (NIH/CIT) [C] <[email protected]> wrote: > I'm running a locally installed PRIDE/BioMart combination, using the > configuration offered by PRIDE at > <http://sourceforge.net/projects/pride-proteome/files/>. The files on SourceForge seem to be outdated by a couple of years now. You can access a current version of the PRIDE BioMart via http://www.ebi.ac.uk/pride/prideMart.do Whilst you can run your own BioMart locally, I suggest that you also have a look at querying the PRIDE BioMart at EBI. You can submit queries manually via the web-interface or you can submit queries programmatically via the XML/RESTful-interface or via the Perl API. Hope that helps. Joachim _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
