Dear MM, Please compile your query using the MartView interface: http://www.biomart.org/biomart/martview/
Once you get to the result page, please click XML button. you can use this XML with a perl client that we provde: webExample.pl (details on http://www.biomart.org/martservice.html). Or any other client of your choice a Arek Kasprzyk Director, Bioinformatics Operations and Principal Investigator Ontario Institute for Cancer Research MaRS Centre, South Tower 101 College Street, Suite 800 Toronto, Ontario, Canada M5G 0A3 Tel: 416-673-8559 Toll-free: 1-866-678-6427 www.oicr.on.ca Administrative Assistant: [email protected] This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. From: Matthias Macé <[email protected]<mailto:[email protected]>> Reply-To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Date: Mon, 14 Mar 2011 10:51:58 -0400 To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [BioMart Users] Biomart xml query Dear Sir/Madam, I would like to xml query Biomart in order to retrieve all genes within a segment flanked by two SNPs: - input = dbSNP ids (rsid, cnv...) - output = genes overlapping with this segment Any help would be apprreciated. Best regards, MM -- "Only two things are infinite, the universe and human stupidity, and I'm not sure about the former." -Albert Einstein Dr Matthias Macé, DVM, PhD INSERM U1043 C.H.U. Purpan - BP 3028 31024 TOULOUSE CEDEX 3 tel: (33) 562 74 45 09 mobile: (33) 608 881481 http://www.u563.toulouse.inserm.fr/
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