Biomart community, I am trying to install Biomart0.8 release 6. When I run martconfigurator script, I get following error messages and the web browser does not open to the home pages as expected(http://localhost:9000)
./dist/scripts/martconfigurator.sh Starting MartConfigurator please wait .... [AWT-EventQueue-0] INFO martconfigurator - ...martconfigurator started. [AWT-EventQueue-0] INFO martconfigurator - Loading resources from org/biomart/configurator/resources/messages [AWT-EventQueue-0] INFO martconfigurator - Done loading resources [AWT-EventQueue-0] INFO martconfigurator - Done loading settings [Thread-4] ERROR martconfigurator - Trying to connect to: msd http://www.biomart.org:80/biomart/martservice?type=configuration&dataset=msd&virtualschema=default [Thread-4] ERROR martconfigurator - Done [AWT-EventQueue-1] INFO martconfigurator - Done saving settings [Thread-9] INFO martconfigurator - ./scripts/biomart-server.sh stop [Thread-9] INFO martconfigurator - stop exitValue: 0 [Thread-9] ERROR martconfigurator - ./scripts/biomart-server.sh start [Thread-9] ERROR martconfigurator - <Info> 1] Please comment on what could possibly cause these errors. I have checked the my system requirements as mentioned in the troble shooting section and they seemd to be okay, i.e. java and ant versions. 2] Also in the biomart manual section "4. Quick start" page 9 mentions that inorder to test msd resgistry restart the server. You will be prompted to save the registry file youʼve created, and after doing so the server will be deployed on your local machine, port 9000. What is the location that this resgistry file should be saved and is there any particular name that you ought to provide to save this registry file? Thanks, Parul -- Parul V. Kudtarkar Scientific Programmer Center for Computational Regulatory Genomics Beckman Institute, California Institute of Technology _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
