Glad to hear it works fine now. Please feel free to drop us a line when you have any further questions. Cheers, Junjun
On 11-06-10 2:54 PM, "[email protected]" <[email protected]> wrote: >Dear Junjun, > >Thanks for a prompt response and updating svn this quickly. The OS we are >using is Linux(release 11) with direct access to the server. >The deployment of BioMart server now works fine. I will definately stay >connected with the community on how we are deploying of Biomart 0.8 rc-6. > >Thanks, >Parul Kudtarkar > >> Dear Parul, >> >> Based on the information you provided, it is not clear what might be the >problem. The ERRORs in the log were not really errors, they are debug >information but mistakenly logged as error. We have already fixed those. >You may want to update your code using 'svn update' >> >> Please see my comments below for your specific questions: >> >> On 11-06-09 7:01 PM, "[email protected]" <[email protected]> wrote: >> >>>Biomart community, >>>I am trying to install Biomart0.8 release 6. When I run martconfigurator >script, I get following error messages and the web browser does not open >to the home pages as expected(http://localhost:9000) >> >> Do you mean in MartConfigurator after you click on 'Start Server' button >the web browser did not open? If so, I'd like to know more information >about your OS environment. What's the operation systems you use, >Windows, >> Linux, or MAC? Were you using X11 forwarding in which MartConfigurator >runs on a remote server? In such case, you will need to open the web >browser manually then point it to http://your_remote_server_address:9000 >> >> If the web browser opened up but had problem loading the homepage, then >you can look into a log file under 'dist/logs/' with a name like >'stdouterr.2011_xx_xx.log' for more information. >> >> >>>./dist/scripts/martconfigurator.sh >>>Starting MartConfigurator please wait .... >>>[AWT-EventQueue-0] INFO martconfigurator - ...martconfigurator started. >[AWT-EventQueue-0] INFO martconfigurator - Loading resources from >org/biomart/configurator/resources/messages >>>[AWT-EventQueue-0] INFO martconfigurator - Done loading resources >[AWT-EventQueue-0] INFO martconfigurator - Done loading settings >[Thread-4] ERROR martconfigurator - Trying to connect to: msd >>>http://www.biomart.org:80/biomart/martservice?type=configuration&dataset >>>=m >sd&virtualschema=default >>>[Thread-4] ERROR martconfigurator - Done >>>[AWT-EventQueue-1] INFO martconfigurator - Done saving settings >>>[Thread-9] INFO martconfigurator - ./scripts/biomart-server.sh stop >[Thread-9] INFO martconfigurator - stop exitValue: 0 >>>[Thread-9] ERROR martconfigurator - ./scripts/biomart-server.sh start >[Thread-9] ERROR martconfigurator - <Info> >>>1] Please comment on what could possibly cause these errors. I have >checked the my system requirements as mentioned in the troble shooting >section and they seemd to be okay, i.e. java and ant versions. >> >> As I mentioned earlier, these were not really errors. It was mistakenly >logged as error. >> >> >>>2] Also in the biomart manual section "4. Quick start" page 9 mentions >that inorder to test msd resgistry restart the server. You will be >prompted to save the registry file youʼve created, and after doing >>> so >>>the server will be deployed on your local machine, port 9000. >>>What is the location that this resgistry file should be saved and is >>> there >>>any particular name that you ought to provide to save this registry >file? >> >> When you are prompted to save the file, you can choose to save any where >you have write permission. However it is recommended to save it under >the >> 'registry' folder. >> >> Hope this helps, and let us know how it goes. >> >> Best regards, >> >> Junjun >> >> >> >>>Thanks, >>>Parul >>>-- >>>Parul V. Kudtarkar >>>Scientific Programmer >>>Center for Computational Regulatory Genomics >>>Beckman Institute, >>>California Institute of Technology >>>_______________________________________________ >>>Users mailing list >>>[email protected] >>>https://lists.biomart.org/mailman/listinfo/users >> >> > > >-- >Parul V. Kudtarkar >Scientific Programmer >Center for Computational Regulatory Genomics >Beckman Institute, >California Institute of Technology > > > > > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
