I am trying to get a list of unique attributes by uploading a list of
RefSeq mRNAs (NM) and wanting to get back
RefSeq mRNAs
Ensembl Gene ID
Ensembl Transcript ID
Ensembl Protein ID
Description
Associated Gene Name
Associated Transcript Name
Gene Biotype
Transcript Biotype
GO Term Accession
GO Term Name
GO Term Definition
Ensembl Family Description
Interpro Description
But this is the answer I am getting:
Serious Error: Error during query execution: Table
'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist
ERROR: caught BioMart::Exception::Database: Error during query execution:
Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist
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Stacktrace:
Exception::Class::Base::throw /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241
BioMart::Dataset::TableSet::_fillAttributeTableWith /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124
BioMart::Dataset::TableSet::_getResultTable /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/DatasetI.pm:1170
BioMart::DatasetI::getResultTable /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:472
BioMart::QueryRunner::_processPath /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:374
BioMart::QueryRunner::_getResultTable /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:194
BioMart::QueryRunner::execute /srv/biomart_server/
biomart.org/biomart-perl/lib/BioMart/Web.pm:2433
(eval) /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm:2201
BioMart::Web::handle_request /srv/biomart_server/
biomart.org/biomart-perl/cgi-bin/martview:96
(eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95
ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler
/usr/lib/perl5/ModPerl/RegistryCooker.pm:204
(eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204
ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170
ModPerl::RegistryCooker::default_handler
/usr/lib/perl5/ModPerl/Registry.pm:31
ModPerl::Registry::handler -e:0
(eval) -e:0
--
-----------------------------------------------------------------
Triantafyllos Paparountas, PhD
- Bioinformatics Research Assistant
http://www.bioinformatics.gr
email: [email protected]
-----------------------------------------------------------------
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