Dear Triantafillos, This is a known bug in BioMart release 64 : http://www.ensembl.info/contact-us/known-bugs/
This bug will be fixed for release 65 due out in November. If your query is urgent you can send me your list of your RefSeq mRNAs IDs and I can get the results for you. Apologies for the inconvenience caused, Best Regards, Thomas On 14 Nov 2011, at 16:11, Triantafillos Paparountas wrote: > > I am trying to get a list of unique attributes by uploading a list of RefSeq > mRNAs (NM) and wanting to get back > > RefSeq mRNAs > Ensembl Gene ID > Ensembl Transcript ID > Ensembl Protein ID > Description > Associated Gene Name > Associated Transcript Name > Gene Biotype > Transcript Biotype > GO Term Accession > GO Term Name > GO Term Definition > Ensembl Family Description > Interpro Description > > > > But this is the answer I am getting: > > Serious Error: Error during query execution: Table > 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist > ERROR: caught BioMart::Exception::Database: Error during query execution: > Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist > > If you repeatedly get directed to this error page, there may be a problem > with your current session parameters. To clear your session and start with a > clean slate, please click the New button below. > > Stacktrace: > Exception::Class::Base::throw > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241 > BioMart::Dataset::TableSet::_fillAttributeTableWith > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124 > BioMart::Dataset::TableSet::_getResultTable > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/DatasetI.pm:1170 > BioMart::DatasetI::getResultTable > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:472 > BioMart::QueryRunner::_processPath > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:374 > BioMart::QueryRunner::_getResultTable > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:194 > BioMart::QueryRunner::execute > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm:2433 > (eval) /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Web.pm:2201 > BioMart::Web::handle_request > /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:96 > (eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95 > ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler > /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170 > ModPerl::RegistryCooker::default_handler /usr/lib/perl5/ModPerl/Registry.pm:31 > ModPerl::Registry::handler -e:0 > (eval) -e:0 > > > -- > ----------------------------------------------------------------- > Triantafyllos Paparountas, PhD > - Bioinformatics Research Assistant > http://www.bioinformatics.gr > email: [email protected] > ----------------------------------------------------------------- > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
