Hi Triantafillos this is a known problem in the current Ensembl release. Rhoda (cced) on this email will be able to give you an ETA for this fix. BTW, if you skip the RefSeq mRNAs attribute from your output, your query should work fine
a a On Mon, Nov 14, 2011 at 11:11 AM, Triantafillos Paparountas < [email protected]> wrote: > > I am trying to get a list of unique attributes by uploading a list of > RefSeq mRNAs (NM) and wanting to get back > > RefSeq mRNAs > Ensembl Gene ID > Ensembl Transcript ID > Ensembl Protein ID > Description > Associated Gene Name > Associated Transcript Name > Gene Biotype > Transcript Biotype > GO Term Accession > GO Term Name > GO Term Definition > Ensembl Family Description > Interpro Description > > > > But this is the answer I am getting: > > Serious Error: Error during query execution: Table > 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist > ERROR: caught BioMart::Exception::Database: Error during query execution: > Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist > > If you repeatedly get directed to this error page, there may be a problem > with your current session parameters. To clear your session and start with > a clean slate, please click the New button below. > > Stacktrace: > Exception::Class::Base::throw /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241 > BioMart::Dataset::TableSet::_fillAttributeTableWith /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124 > BioMart::Dataset::TableSet::_getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/DatasetI.pm:1170 > BioMart::DatasetI::getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:472 > BioMart::QueryRunner::_processPath /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:374 > BioMart::QueryRunner::_getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:194 > BioMart::QueryRunner::execute /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Web.pm:2433 > (eval) /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Web.pm:2201 > BioMart::Web::handle_request /srv/biomart_server/ > biomart.org/biomart-perl/cgi-bin/martview:96 > (eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95 > ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler > /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170 > ModPerl::RegistryCooker::default_handler > /usr/lib/perl5/ModPerl/Registry.pm:31 > ModPerl::Registry::handler -e:0 > (eval) -e:0 > > > -- > ----------------------------------------------------------------- > Triantafyllos Paparountas, PhD > - Bioinformatics Research Assistant > http://www.bioinformatics.gr > email: [email protected] > ----------------------------------------------------------------- > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
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