Hello Arek,
Thank you for the reply. In my case the two tables contain identical data structures but for different species so a group sounds like what I want. How do I setup a group that shares the same structure? Right now if I group the two configs (access points) I still need to setup each config and in the end I am unable to switch between the two in the website (martwizard). Thanks again, Jayson From: Arek Kasprzyk [mailto:[email protected]] Sent: Wednesday, February 22, 2012 12:00 AM To: HARSHBARGER Jayson Cc: [email protected] Subject: Re: [BioMart Users] Dataset vs. Database vs. Group vs.... Hi Jayson, yes, i agree with you that the current naming convention requires some tidying up. We are aware of this but the clean up did not make to rc6 so you will have to put up with this for a while longer. To shed some light on this: Unlike 0.7, the 0.8 does not allow for multiple datasets to reside in one mart unless they behave like a group ei datasets sharing the same filters and attributes: (example: species in ensembl or cancer types in ICGC). "config" is being replaced by "access point". Access point describes the configuration of a dataset (or a group of datasets if they reside in one mart). a On Thu, Feb 16, 2012 at 5:00 AM, HARSHBARGER Jayson <[email protected]> wrote: Hello again Biomart developers, I'm having issues understanding the dataset/database naming convention in 0.8. I have two mysql tables in one mysql database. I would like to add these two tables to BioMart as two separate datasets in one database. By default when I add these two data tables and create two corresponding configs they have the same dataset name (named after the database) and different database names (config names). This is opposite of what I would like. If I group these two configs they appear to have the same database name and dataset name. I can then rename the datasets under "Data Source Management", which appears to work, but I am unable to change datasets in the mart wizard. I've tried renaming the dataset in various other places without any luck. Overall I'm confused regarding the naming conventions here. config name, dataset name, source name, group. Any help? Thank you, Jayson _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
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