Hi Aritra. Same answer that for Sohini question on the Biomart users list: This is a known bug for ensembl release 66, About 300 linc-RNAs have been accidentally excluded from the human gene set : http://www.ensembl.info/contact-us/known-bugs/ This will be fixed for release 67 which should be released in May 2012. In the meantime you can still use ensembl release 65 on our archive website : http://dec2011.archive.ensembl.org/index.html
Sorry for the inconvenience and thank you for your feedback, Regards, Thomas Maurel On 14 Mar 2012, at 15:57, Aritra Deb wrote: > Hello, > > I am working on lincRNA, hence downloaded the data available in the latest > relies ENSEMBL Gene66 and found that information about several lincRNA genes > (e.g. MALAT1, H19) is missing in this new relies, but these was available in > the previous relies ENSEMBL Gene65. Moreover, whenever I'm searching ENSEMBL > using a query like "H19" it is showing the details (including that this is a > lincRNA gene) that was available in the previous relies. This is confusing > me, as whenever I'm trying to find out such genes in the downloaded data from > latest relies I couldn't find anything. Please help me to use this database > efficiently. Thanks. > > Aritra > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK
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