Hi Kevin, I agree with Syed, perhaps you should first try installing in the environment that has been extensively tested e.g mac OS X and that you fully control (e.g a laptop). It will be then easier for you to separate the issues that originate from your particular server setup from BioMart itself.
a On Thu, Oct 4, 2012 at 6:39 PM, Syed Haider <[email protected]> wrote: > Hey Kevin, > > please dont drive the operating system choice by Biomart - in principle > Biomart v0.8 should work on OSX, Win and *NIX - thats one of the many > reasons it was rewritten in Java. > > once your new system is up and running, follow the instructions in docs > and see how far you go. If you face same problems, a snapshot of logs would > certainly help. it should be under dist/logs/ > > Syed > > > On 3 October 2012 21:50, Kevin Rue <[email protected]> wrote: > >> Hello everyone, >> >> I am an early PhD students in bioninformatics, and wish to integrate gene >> expression microarray data that my group has generated into the BioMart >> context. (We've mapped the probes to the Entrez & EnsEMBL genes IDs) >> >> As per a previous email yesterday, I tried installing BioMart on the >> current small server of the lab. The installation was successful, but I get >> a timeout error every time try to start the quick start example in the >> manual. (which is missing some details about troubleshooting, to my taste). >> The server runs on Debian 5.0.9, quite outdated since even the apt-get >> command isn't able to read headers... >> >> I got an blank PC to try and set up a new server, and now I'm turning to >> you, dear community, to advise me with a configuration proven to be >> compatible, and run smoothly a BioMart instance. >> Could anyone suggest such a configuration (OS)? >> >> Thanks in advance, >> Kévin >> >> -- >> Kévin RUE-ALBRECHT >> Computational Infection Biology PhD Programme >> University College Dublin >> Ireland >> http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en >> >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.biomart.org/mailman/listinfo/users >> >> > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
