Hi Katleen, We have recently updated the server to Ensembl 69, perhaps this was just a temporary glitch
The following query : http://www.biomart.org/biomart/martview/1456454c60d2a4397ffb57525b5acbb3 produces the output: Ensembl Gene ID Ensembl Transcript ID Zebra Finch Ensembl Gene ID Mouse Ensembl Gene ID ENSG00000259662 ENST00000539570 ENSTGUG00000003187 ENSMUSG00000050503 ENSG00000258865 ENST00000510508 ENSTGUG00000012784 ENSMUSG00000075707 ENSG00000258664 ENST00000553856 ENSMUSG00000079252 ENSG00000258518 ENST00000483851 ENSTGUG00000011221 ENSMUSG00000027833 ENSG00000259741 ENST00000558098 ENSTGUG00000000764 ENSMUSG00000021156 ENSG00000259741 ENST00000558098 ENSTGUG00000017137 ENSMUSG00000021156 ENSG00000265969 ENST00000292095 ENSTGUG00000000184 ENSMUSG00000032086 ENSG00000262355 ENST00000305831 ENSTGUG00000014163 ENSMUSG00000021838 ENSG00000262355 ENST00000305831 ENSTGUG00000013086 ENSMUSG00000021838 ENSG00000198888 ENST00000361390 ENSTGUG00000018737 ENSMUSG00000064341 similarly the 08 server: http://central.biomart.org/martwizard/#!/Genome?mart=Ensembl+Genes+69+(WTSI%2C+UK)&step=4&attributes=homologs_ensembl_gene_id%2Cmouse_ensembl_gene%2Cinter_paralog_zebrafish_ensembl_gene&homolog_filters%5B%5D=with_mmusculus_homolog&homolog_filters%5B%5D=only&homolog_filters%5B%5D=Homolog+filters+Orthologous+Mouse+Genes a. On Mon, Nov 26, 2012 at 9:40 AM, Katleen De Preter < [email protected]> wrote: > Hi,**** > > ** ** > > I’m trying to perform cross-species ortholog searches (mice-human- > zebrafish). However, it seems that this option is currently not working > on biomart (website and via R). The same script that previously worked, > is currently not successful. Do you know about this problem?**** > > ** ** > > Kind regards, > > Katleen De Preter**** > > ** ** > > ** ** > > -- > > dr. ir. Katleen De Preter > Center for Medical Genetics Ghent (CMGG) > Ghent University Hospital > Medical Research Building (MRB), > 2nd floor, room 120.038 > De Pintelaan 185, > B-9000 Ghent, Belgium > +32 9 332 5533 (phone) | +32 9 332 6549 (fax) > > http://medgen.ugent.be > [email protected] **** > > ** ** > > ** ** > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
