Hi, I am using XML queries as given below (as a sample) for extracting the .bin files for specific organisms. I am able to create xml queries only for three organisms i.e., hsapieans, mmusculus and rnorvegicus.
<?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE Query> <Query virtualSchemaName = "default" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" > <Dataset name = "hsapiens_gene_ensembl" interface = "default" > <Attribute name = "ensembl_gene_id" /> <Attribute name = "ensembl_transcript_id" /> <Attribute name = "entrezgene" /> </Dataset> </Query> If i see the queries, mainly they are different from each other on dataset name *XYZ*_gene_ensembl I wanted to gather data for other organisms too. I was wondering how can I do that. Is there any list of dataset names which I could use and create separate xml query files for each organism or such xml queries are available on your web? Thanks in advance for your help. Regards M. Javed -- Kind regards MJ * Muhammad Javed, Research Associate, Department of Computer Science, Wayne State University, Detroit, 5057 Woodward Avenue, Suit 3010, MI 48202 *
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