Hi Muhammad, yes. you can get the list of all datasets (species) available from Ensembl using our web service interface
e. g http://www.biomart.org/biomart/martservice?type=datasets&mart=ensembl For more info about this interface look at http://www.biomart.org/martservice.html a On Wed, Jan 23, 2013 at 5:44 PM, Muhammad Javed <[email protected]> wrote: > Hi, > I am using XML queries as given below (as a sample) for extracting the > .bin files for specific organisms. > I am able to create xml queries only for three organisms i.e., > hsapieans, mmusculus and rnorvegicus. > > <?xml version="1.0" encoding="UTF-8"?> > <!DOCTYPE Query> > <Query virtualSchemaName = "default" formatter = "TSV" header = "0" > uniqueRows = "0" count = "" datasetConfigVersion = "0.6" > > <Dataset name = "hsapiens_gene_ensembl" interface = "default" > > <Attribute name = "ensembl_gene_id" /> > <Attribute name = "ensembl_transcript_id" /> > <Attribute name = "entrezgene" /> > </Dataset> > </Query> > > If i see the queries, mainly they are different from each other on dataset > name *XYZ*_gene_ensembl > > I wanted to gather data for other organisms too. I was wondering how can I > do that. > Is there any list of dataset names which I could use and create separate > xml query files for each organism or such xml queries are available on your > web? > > Thanks in advance for your help. > > Regards > M. Javed > > > > > > > > -- > Kind regards > MJ > > * > Muhammad Javed, Research Associate, Department of Computer Science, Wayne > State University, Detroit, 5057 Woodward Avenue, Suit 3010, > MI 48202 > * >
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