On 17 May 2011 15:21, Hung-ShengTsao (Lao Tsao) Ph.D. <[email protected]> wrote: > how many total slots in your cluster for 5000 tasks? > Well the cluster has roughly 2000 odd slots suitable for running such jobs. We have a maxujobs set to 512 and the user has a total of 512 tasks runing. However in the past this has not caused the queued portion of the job to disapear. The cluster has a few thousand more slots but a)Most of those are off now due to an aircon failure and b)The job in question isn't eligible to run in them for other reasons.
William > > On 5/17/2011 10:19 AM, William Hay wrote: >> On 17 May 2011 15:06, Hung-ShengTsao (Lao Tsao) Ph.D.<[email protected]> >> wrote: >>> I just check in a test cluster >>> qsub -t 1-10 simple.sh >>> qstat -s p -u<uid> does show qw stat with the ja-task ID changing >>> qstat -s r -u uid show running job >>> which version of ge your are running >>> I use ge6.2u5 in r5.4 >>> regards >>> >> 6.2u3 (we should upgrade). We also have array jobs from other jobs >> where both running and queued tasks show up. >> >> William >>> >>> >>> On 5/17/2011 9:51 AM, William Hay wrote: >>>> One of our users has submitted an array job of about 5000 tasks. >>>> >>>> Some of these tasks are running. Some are not. If I run qstat -s rp >>>> -u<username> then I see tasks in both states "r" or state "qw". >>>> Running qstat -s r -u<username> shows the running tasks. However >>>> running qstat -s p -u<username> does not show the tasks in state qw. >>>> >>>> These waiting tasks had previously been in an error state caused by a >>>> problem with our cluster file system but I cleared the error once we >>>> had fixed >>>> the problem. Any idea what is going on and whether these tasks will >>>> eventually run. >>>> >>>> William >>>> _______________________________________________ >>>> users mailing list >>>> [email protected] >>>> https://gridengine.org/mailman/listinfo/users > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
