On 12/30/11 04:21 PM, Reuti wrote:
Am 30.12.2011 um 16:19 schrieb Gerard Henry:
On 12/30/11 04:04 PM, Reuti wrote:
Am 30.12.2011 um 15:53 schrieb Gerard Henry:
On 12/30/11 03:39 PM, Reuti wrote:
Am 30.12.2011 um 15:29 schrieb Gerard Henry:
hello all,
i'm in trouble with a ressource limit i don't find where it is.
I have several jobs that are killed, as it is written in the SGE error file:
/local/export/sge/default/spool/charybde/job_scripts/14561: line 12: 25776
Killed ./benchruntime
Is there more memory installed than 4G? It could be the oom-killer. Can you
please check /var/log/messages of the exechosts.
yes, exechosts have 8Go. Nothing in
/local/export/sge/default/spool/qmaster/messages nor /var/log/messages. And all
the killed jobs have maxvmem 4Go, even if the job wasn't launched with a limit:
qsub -q long myjob
Is this by accident only a 32 bit application:
$ file ./benchruntime
not really:
-sh-3.2$ file ./benchruntime-0.70
./benchruntime-0.70: ELF 64-bit LSB executable, AMD x86-64, version 1 (SYSV),
for GNU/Linux 2.6.9, dynamically linked (uses shared libs), for GNU/Linux
2.6.9, not stripped
Okay, then: any ulimit in effect already for the running execd?
$ ulimit -aH
$ ulimit -aS
-- Reuti
i don't think:
-sh-3.2$ ulimit -aH
core file size (blocks, -c) unlimited
data seg size (kbytes, -d) unlimited
scheduling priority (-e) 0
file size (blocks, -f) unlimited
pending signals (-i) 69632
max locked memory (kbytes, -l) 32
max memory size (kbytes, -m) unlimited
open files (-n) 1024
pipe size (512 bytes, -p) 8
POSIX message queues (bytes, -q) 819200
real-time priority (-r) 0
stack size (kbytes, -s) unlimited
cpu time (seconds, -t) unlimited
max user processes (-u) 69632
virtual memory (kbytes, -v) unlimited
file locks (-x) unlimited
-sh-3.2$ ulimit -aS
core file size (blocks, -c) 0
data seg size (kbytes, -d) unlimited
scheduling priority (-e) 0
file size (blocks, -f) unlimited
pending signals (-i) 69632
max locked memory (kbytes, -l) 32
max memory size (kbytes, -m) unlimited
open files (-n) 1024
pipe size (512 bytes, -p) 8
POSIX message queues (bytes, -q) 819200
real-time priority (-r) 0
stack size (kbytes, -s) 10240
cpu time (seconds, -t) unlimited
max user processes (-u) 69632
virtual memory (kbytes, -v) unlimited
file locks (-x) unlimited
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