Am 30.12.2011 um 16:46 schrieb Gerard Henry: > On 12/30/11 04:21 PM, Reuti wrote: >> Am 30.12.2011 um 16:19 schrieb Gerard Henry: >> >>> On 12/30/11 04:04 PM, Reuti wrote: >>>> Am 30.12.2011 um 15:53 schrieb Gerard Henry: >>>> >>>>> On 12/30/11 03:39 PM, Reuti wrote: >>>>>> Am 30.12.2011 um 15:29 schrieb Gerard Henry: >>>>>> >>>>>>> hello all, >>>>>>> i'm in trouble with a ressource limit i don't find where it is. >>>>>>> I have several jobs that are killed, as it is written in the SGE error >>>>>>> file: >>>>>>> /local/export/sge/default/spool/charybde/job_scripts/14561: line 12: >>>>>>> 25776 Killed ./benchruntime >>>>>> >>>>>> Is there more memory installed than 4G? It could be the oom-killer. Can >>>>>> you please check /var/log/messages of the exechosts. >>>>>> >>>>> >>>>> yes, exechosts have 8Go. Nothing in >>>>> /local/export/sge/default/spool/qmaster/messages nor /var/log/messages. >>>>> And all the killed jobs have maxvmem 4Go, even if the job wasn't launched >>>>> with a limit: >>>>> qsub -q long myjob >>>> >>>> Is this by accident only a 32 bit application: >>>> >>>> $ file ./benchruntime >>>> >>> >>> >>> not really: >>> -sh-3.2$ file ./benchruntime-0.70 >>> ./benchruntime-0.70: ELF 64-bit LSB executable, AMD x86-64, version 1 >>> (SYSV), for GNU/Linux 2.6.9, dynamically linked (uses shared libs), for >>> GNU/Linux 2.6.9, not stripped >> >> Okay, then: any ulimit in effect already for the running execd? >> >> $ ulimit -aH >> $ ulimit -aS >> >> -- Reuti > > i don't think: > -sh-3.2$ ulimit -aH
Is this the output of the job? In an interactive session it might be different. BTW: What does the complete jobscript look like? Any traps or limits set, or does the called binary set a limit on its own? -- Reuti > core file size (blocks, -c) unlimited > data seg size (kbytes, -d) unlimited > scheduling priority (-e) 0 > file size (blocks, -f) unlimited > pending signals (-i) 69632 > max locked memory (kbytes, -l) 32 > max memory size (kbytes, -m) unlimited > open files (-n) 1024 > pipe size (512 bytes, -p) 8 > POSIX message queues (bytes, -q) 819200 > real-time priority (-r) 0 > stack size (kbytes, -s) unlimited > cpu time (seconds, -t) unlimited > max user processes (-u) 69632 > virtual memory (kbytes, -v) unlimited > file locks (-x) unlimited > > -sh-3.2$ ulimit -aS > core file size (blocks, -c) 0 > data seg size (kbytes, -d) unlimited > scheduling priority (-e) 0 > file size (blocks, -f) unlimited > pending signals (-i) 69632 > max locked memory (kbytes, -l) 32 > max memory size (kbytes, -m) unlimited > open files (-n) 1024 > pipe size (512 bytes, -p) 8 > POSIX message queues (bytes, -q) 819200 > real-time priority (-r) 0 > stack size (kbytes, -s) 10240 > cpu time (seconds, -t) unlimited > max user processes (-u) 69632 > virtual memory (kbytes, -v) unlimited > file locks (-x) unlimited _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
