Am 20.01.2014 um 12:20 schrieb Ian Johnson: > Reuti, > > Where can I get hold of the manual now Oracle aren't supporting GE?
I'm not sure whether the old SUN documentation is also under SISSL - I fear it's not the case. As now Univa has all rights on the GE assets, they would have to state whether it's allowed to distribute this old SUN stuff nowadays. -- Reuti > Thanks, > > Ian > > On Mon, 20 Jan 2014 11:19:14 -0000, Reuti <[email protected]> wrote: > >> Am 20.01.2014 um 12:14 schrieb Ian Johnson: >> >>> Reuti, >>> >>> PS Are the job exit status codes defined in errno.h or are they SGE defined? >> >> They are in the user manual, pages 141 ff. 26 means error while opening the >> output/error file. >> >> -- Reuti >> >>> Ian Johnson >>> Software Engineer >>> >>> >>> Capita Translation and Interpreting >>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): +44 >>> 845 367 7000 | Tel (US): +1 (800) 579-5010 >>> | [email protected] | Skype ID: ian.johnson_als >>> www.capitatranslationinterpreting.com >>> >>> >>> On 14 January 2014 18:34, Reuti <[email protected]> wrote: >>> Am 14.01.2014 um 18:27 schrieb Ian Johnson: >>> >>> > Reuti, >>> > >>> > There's no file staging installed. The job script is being copied to the >>> > execution host. >>> >>> Correct (for the job script itself). >>> >>> >>> > The output file *is* being opened in ~smartmate but it is of zero length. >>> >>> I would assume that they is not created at all in this location, only on >>> the nodes. Or do you mean the home directory on the nodes? >>> >>> NB: In Torque there is a file staging for the .o/.e files, but not in SGE. >>> >>> -- Reuti >>> >>> >>> > Thanks, >>> > >>> > Ian >>> > >>> > On Tue, 14 Jan 2014 17:18:06 -0000, Reuti <[email protected]> >>> > wrote: >>> > >>> >> Am 14.01.2014 um 18:04 schrieb Ian Johnson: >>> >> >>> >>> Reuti, >>> >>> >>> >>> There is no output from the script at all in the >>> >>> ~smartmate/job.sh.o[0-9]+ files. The home directory of the smartmate >>> >>> user is local disk. However, grid engine is installed on an NFS share. >>> >> >>> >> Do you have any file staging installed? Otherwise the output will not be >>> >> send to the real home directory of the user. Also the input files could >>> >> be missing on the execution host. >>> >> >>> >> -- Reuti >>> >> >>> >> >>> >> >>> >>> Is there other information you require? Is there any way to get the >>> >>> function call that is failing in shepherd, e.g. more verbose tracing? >>> >>> >>> >>> Thanks, >>> >>> >>> >>> Ian >>> >>> >>> >>> On Tue, 14 Jan 2014 15:19:34 -0000, Reuti <[email protected]> >>> >>> wrote: >>> >>> >>> >>>> Hi, >>> >>>> >>> >>>> Am 14.01.2014 um 15:19 schrieb Ian Johnson: >>> >>>> >>> >>>>> I have a simple job, which echoes `date` to stdout, that I'm using to >>> >>>>> test an Open Grid Engine installation. Running qsub as root the job >>> >>>>> is run successfully. However, using another non-superuser, in this >>> >>>>> case smartmate user, the output from qacct -j says that the job has >>> >>>>> exited with exit status 11. The shepherd trace confirms this (see >>> >>>>> below). >>> >>>> >>> >>>> Do you have any output? 11 means "Resource temporarily unavailable", >>> >>>> which could mean it can't write to the (mounted?) home directory of >>> >>>> the user. How is it mount configured? >>> >>>> >>> >>>> AFAICS the user is known, as otherwise you would face a different >>> >>>> error. >>> >>>> >>> >>>> -- Reuti >>> >>>> >>> >>>> >>> >>>>> Would anyone have an idea as to what is going on? Thank you. >>> >>>>> >>> >>>>> <shepherd_trace> >>> >>>>> 01/14/2014 14:08:56 [0:2723]: shepherd called with uid = 0, euid = 0 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: starting up 2011.11 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: setpgid(2723, 2723) returned 0 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: do_core_binding: "binding" parameter >>> >>>>> not found in config file >>> >>>>> 01/14/2014 14:08:56 [0:2723]: no prolog script to start >>> >>>>> 01/14/2014 14:08:56 [0:2723]: parent: forked "job" with pid 2724 >>> >>>>> 01/14/2014 14:08:56 [0:2724]: child: starting son(job, >>> >>>>> /opt/capitati/ge2011.11/smartmate/spool/exec-1/job_scripts/32, 0); >>> >>>>> 01/14/2014 14:08:56 [0:2724]: pid=2724 pgrp=2724 sid=2724 old >>> >>>>> pgrp=2723 getlogin()=root >>> >>>>> 01/14/2014 14:08:56 [0:2723]: parent: job-pid: 2724 >>> >>>>> 01/14/2014 14:08:56 [0:2724]: reading passwd information for user >>> >>>>> 'smartmate' >>> >>>>> 01/14/2014 14:08:56 [0:2724]: setosjobid: uid = 0, euid = 0 >>> >>>>> 01/14/2014 14:08:56 [0:2724]: setting limits >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_CPU setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_FSIZE setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_DATA setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_STACK setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_CORE setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_VMEM/RLIMIT_AS setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_RSS setting: (soft >>> >>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> >>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>> >>>>> 18446744073709551615(INFINITY)) >>> >>>>> 01/14/2014 14:08:56 [0:2724]: setting environment >>> >>>>> 01/14/2014 14:08:56 [0:2724]: Initializing error file >>> >>>>> 01/14/2014 14:08:56 [0:2724]: switching to intermediate/target user >>> >>>>> 01/14/2014 14:08:56 [0:2723]: wait3 returned 2724 (status: 2816; >>> >>>>> WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 11) >>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited with exit status 11 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: reaped "job" with pid 2724 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited not due to signal >>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited with status 11 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: now sending signal KILL to pid -2724 >>> >>>>> 01/14/2014 14:08:56 [0:2723]: writing usage file to "usage" >>> >>>>> 01/14/2014 14:08:56 [0:2723]: no tasker to notify >>> >>>>> 01/14/2014 14:08:56 [0:2723]: no epilog script to start >>> >>>>> </shepherd_trace> >>> >>>>> >>> >>>>> <job_script> >>> >>>>> #!/bin/bash >>> >>>>> # >>> >>>>> #$ -j y >>> >>>>> # >>> >>>>> #$ -S /bin/bash >>> >>>>> >>> >>>>> echo "Hello World" >>> >>>>> echo `date` >>> >>>>> </job_script> >>> >>>>> >>> >>>>> Ian Johnson >>> >>>>> Software Engineer >>> >>>>> >>> >>>>> >>> >>>>> Capita Translation and Interpreting >>> >>>>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel >>> >>>>> (UK): +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>> >>>>> | [email protected] | Skype ID: ian.johnson_als >>> >>>>> www.capitatranslationinterpreting.com >>> >>>>> _______________________________________________ >>> >>>>> users mailing list >>> >>>>> [email protected] >>> >>>>> https://gridengine.org/mailman/listinfo/users >>> >>>> >>> >>> >>> >>> >>> >>> -- >>> >>> Kind regards, >>> >>> >>> >>> Ian Johnson >>> >>> Software Engineer >>> >>> >>> >>> Capita Translation and Interpreting >>> >>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): >>> >>> +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>> >>> | [email protected] | Skype ID: ian.johnson_als >>> >>> www.capitatranslationinterpreting.com >>> >> >>> > >>> > >>> > -- >>> > Kind regards, >>> > >>> > Ian Johnson >>> > Software Engineer >>> > >>> > Capita Translation and Interpreting >>> > Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): >>> > +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>> > | [email protected] | Skype ID: ian.johnson_als >>> > www.capitatranslationinterpreting.com >>> >>> >> > > > -- > Kind regards, > > Ian Johnson > Software Engineer > > Capita Translation and Interpreting > Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): +44 > 845 367 7000 | Tel (US): +1 (800) 579-5010 > | [email protected] | Skype ID: ian.johnson_als > www.capitatranslationinterpreting.com _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
