Am 21.01.2014 um 10:55 schrieb Ian Johnson: > Reuti, > > Writing to the /tmp directory produces the same results. However, looking in > the /tmp I saw some shepherd log files containing: > > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/trace) > failed: Permission denied > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/trace) > failed: Permission denied > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/trace) > failed: Permission denied > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/trace) > failed: Permission denied > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/error) > failed: Permission denied > 01/21/2014 09:47:17 [1001:1001 2433]: PANIC: > creat(/opt/capitati/ge2011.11/smartmate/spool/exec-1/active_jobs/48.1/exit_status) > failed: Permission denied > > However, these files are created and contain data! The uid and gid 1001 is > the smartmate uid and gid. Plus, my other installations of GE2011.11 have the > spool directory ownership of root:root.
I set them always to the SGE admin as owner and his group. Is root also your SGE admin or did you define any other: $ cat /usr/sge/default/common/bootstrap # Version: 6.2u5 # admin_user sgeadmin ... $ ls -lhd /var/spool/sge/ drwxr-xr-x 3 sgeadmin gridware 4.0K 2013-07-29 12:06 /var/spool/sge/ Are the permissions different on a higher level in the complete path? Any ACLs for them in place? -- Reuti > Thanks, > > Ian > > > On Mon, 20 Jan 2014 17:49:25 -0000, Reuti <[email protected]> wrote: > >> Am 20.01.2014 um 18:04 schrieb Ian Johnson: >> >>> Same behaviour with a prolog script. Details follow... >> >> Good (or not). What happens, when you write to a local directory like /tmp? >> >> -- Reuti >> >> >>> The prolog script: >>> >>> <prolog_script> >>> #!/bin/bash >>> >>> cd /opt/capitati/smartmate_data/test >>> >>> echo "${JOB_ID}" > job.${JOB_ID}.prolog >>> </prolog_script> >>> >>> And is configured globally. >>> >>> >>> >>> Running qsub as root yields: >>> >>> The prolog script runs and outputs the following to >>> /opt/capitati/smartmate_data/test >>> >>> -rw-rw----+ 1 root smartmate 3 Jan 20 2014 job.44.prolog >>> >>> And job script creates and writes its stdout and stderr files: >>> >>> -rw-r-----+ 1 root smartmate 0 Jan 20 2014 job_root_err.log >>> -rw-r-----+ 1 root smartmate 41 Jan 20 2014 job_root_std.log >>> >>> >>> >>> Running qsub as smartmate user yields: >>> >>> The prolog file is created and written to: >>> >>> -rw-rw----+ 1 smartmate smartmate 3 Jan 20 2014 job.45.prolog >>> >>> However, the job script fails: >>> >>> <shepherd_trace> >>> 01/20/2014 17:01:41 [0:2011]: shepherd called with uid = 0, euid = 0 >>> 01/20/2014 17:01:41 [0:2011]: starting up 2011.11 >>> 01/20/2014 17:01:41 [0:2011]: setpgid(2011, 2011) returned 0 >>> 01/20/2014 17:01:41 [0:2011]: do_core_binding: "binding" parameter not >>> found in config file >>> 01/20/2014 17:01:41 [0:2011]: parent: forked "prolog" with pid 2012 >>> 01/20/2014 17:01:41 [0:2012]: child: starting son(prolog, >>> /opt/capitati/smartmate_data/test/prolog.sh, 0); >>> 01/20/2014 17:01:41 [0:2011]: using signal delivery delay of 120 seconds >>> 01/20/2014 17:01:41 [0:2012]: pid=2012 pgrp=2012 sid=2012 old pgrp=2011 >>> getlogin()=<no login set> >>> 01/20/2014 17:01:41 [0:2011]: parent: prolog-pid: 2012 >>> 01/20/2014 17:01:41 [0:2012]: reading passwd information for user >>> 'smartmate' >>> 01/20/2014 17:01:41 [0:2012]: setting limits >>> 01/20/2014 17:01:41 [0:2012]: setting environment >>> 01/20/2014 17:01:41 [0:2012]: Initializing error file >>> 01/20/2014 17:01:41 [0:2012]: switching to intermediate/target user >>> 01/20/2014 17:01:41 [0:2011]: wait3 returned 2012 (status: 0; WIFSIGNALED: >>> 0, WIFEXITED: 1, WEXITSTATUS: 0) >>> 01/20/2014 17:01:41 [0:2011]: prolog exited with exit status 0 >>> 01/20/2014 17:01:41 [0:2011]: reaped "prolog" with pid 2012 >>> 01/20/2014 17:01:41 [0:2011]: prolog exited not due to signal >>> 01/20/2014 17:01:41 [0:2011]: prolog exited with status 0 >>> 01/20/2014 17:01:41 [0:2011]: parent: forked "job" with pid 2013 >>> 01/20/2014 17:01:41 [0:2013]: child: starting son(job, >>> /opt/capitati/ge2011.11/smartmate/spool/exec-1/job_scripts/45, 0); >>> 01/20/2014 17:01:41 [0:2013]: pid=2013 pgrp=2013 sid=2013 old pgrp=2011 >>> getlogin()=<no login set> >>> 01/20/2014 17:01:41 [0:2011]: parent: job-pid: 2013 >>> 01/20/2014 17:01:41 [0:2013]: reading passwd information for user >>> 'smartmate' >>> 01/20/2014 17:01:41 [0:2013]: setosjobid: uid = 0, euid = 0 >>> 01/20/2014 17:01:41 [0:2013]: setting limits >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_CPU setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_FSIZE setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_DATA setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_STACK setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_CORE setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_VMEM/RLIMIT_AS setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: RLIMIT_RSS setting: (soft >>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>> resulting: (soft 18446744073709551615(INFINITY), hard >>> 18446744073709551615(INFINITY)) >>> 01/20/2014 17:01:41 [0:2013]: setting environment >>> 01/20/2014 17:01:41 [0:2013]: Initializing error file >>> 01/20/2014 17:01:41 [0:2013]: switching to intermediate/target user >>> 01/20/2014 17:01:41 [0:2011]: wait3 returned 2013 (status: 2816; >>> WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 11) >>> 01/20/2014 17:01:41 [0:2011]: job exited with exit status 11 >>> 01/20/2014 17:01:41 [0:2011]: reaped "job" with pid 2013 >>> 01/20/2014 17:01:41 [0:2011]: job exited not due to signal >>> 01/20/2014 17:01:41 [0:2011]: job exited with status 11 >>> 01/20/2014 17:01:41 [0:2011]: now sending signal KILL to pid -2013 >>> 01/20/2014 17:01:41 [0:2011]: writing usage file to "usage" >>> 01/20/2014 17:01:41 [0:2011]: no tasker to notify >>> 01/20/2014 17:01:41 [0:2011]: no epilog script to start >>> </shepherd_trace> >>> >>> >>> Thanks, >>> >>> Ian >>> >>> >>> >>> On Mon, 20 Jan 2014 16:12:26 -0000, Reuti <[email protected]> >>> wrote: >>> >>>> Am 20.01.2014 um 17:08 schrieb Ian Johnson: >>>> >>>>> Reuti, >>>>> >>>>> Inline... >>>>> >>>>> On Mon, 20 Jan 2014 14:43:51 -0000, Reuti <[email protected]> >>>>> wrote: >>>>> >>>>>> Hi, >>>>>> >>>>>> Am 20.01.2014 um 13:04 schrieb Ian Johnson: >>>>>> >>>>>>> Reuti, >>>>>>> >>>>>>> The directory /opt/capitati/smartmate_data/test is now writable by the >>>>>>> smartmate user. Sorry, this was causing the 26 exit status. I'm back to >>>>>>> the exit status 11 again. Now, both the o and e files opened in the >>>>>>> /opt/capitati/smartmate_data/test directory but are of zero length. >>>>>> >>>>>> is the directory in question mounted by autofs/Automounter or a hard NFS >>>>>> mount of the user smartmate_data? >>>>> >>>>> This is mounted at boot-time from the fstab file. >>>>> >>>>>> >>>>>> - Any prolog on a queue or global level? >>>>> >>>>> No prolog on any queue or global. >>>>> >>>>>> - What user:group has the created (empty) file? >>>>> >>>>> smartmate:smartmate >>>>> >>>>>> - How are the users/IDs distributed to the nodes? >>>>> >>>>> Users and groups are created locally on each exec node and the master >>>>> node. User and group names have identical IDs. >>>>> >>>>> >>>>> This problem seems to seem from the fact that the smartmate user is *not* >>>>> a superuser. I think it's a problem when the UID and GID are changed in >>>>> Shepherd in order to run the job script. >>>> >>>> But in principle "smartmate" can write at this location? >>>> >>>> To investigate further, you could define a small prolog running as a) root >>>> and then b) smartmate and write something. Does it show the same behavior? >>>> >>>> -- Reuti >>>> >>>> >>>>> Thanks, >>>>> >>>>> Ian >>>>> >>>>>> >>>>>> -- Reuti >>>>>> >>>>>> >>>>>>> The spool directory is in /opt/capitati/ge2011.11/smartmate/spool which >>>>>>> is owned by root:root. >>>>>>> >>>>>>> Could you guess as to where the shepherd code is failing using the >>>>>>> trace logs I sent last week? I've been looking through the shepherd >>>>>>> code but I can't see anything obvious. >>>>>>> >>>>>>> Thanks, >>>>>>> >>>>>>> Ian >>>>>>> >>>>>>> On Mon, 20 Jan 2014 11:52:46 -0000, Reuti <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> Am 20.01.2014 um 12:11 schrieb Ian Johnson: >>>>>>>> >>>>>>>>> Reuti, >>>>>>>>> >>>>>>>>> I have changed the qsub options to write stdout and stdout to an NFS >>>>>>>>> mounted directory, and the job script is still not being executed. >>>>>>>>> Now the job is exiting, according to the shepherd trace, with exit >>>>>>>>> status 26. This time no files o and e files are created. >>>>>>>> >>>>>>>> The path /opt/capitati/smartmate_data/test/job_sm_out.log is writable >>>>>>>> (for the user) on the node and all directories in the path exist? >>>>>>>> >>>>>>>> BTW: Is the spool directoty local on each host (preferable) or in a >>>>>>>> shared /opt/capitati/? >>>>>>>> >>>>>>>> -- Reuti >>>>>>>> >>>>>>>> >>>>>>>>> What does exit status 26 mean? And given the previous behaviour on a >>>>>>>>> local disk (job exit status 11), can you think of anything that is >>>>>>>>> preventing the non-superuser from executing jobs on execution nodes? >>>>>>>>> This is turning into a critical bug for us. >>>>>>>>> >>>>>>>>> Thanks for your continued help, >>>>>>>>> >>>>>>>>> Ian >>>>>>>>> >>>>>>>>> <shepherd_trace> >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: shepherd called with uid = 0, euid = 0 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: starting up 2011.11 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: setpgid(1486, 1486) returned 0 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: do_core_binding: "binding" parameter >>>>>>>>> not found in config file >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: no prolog script to start >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: parent: forked "job" with pid 1487 >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: child: starting son(job, >>>>>>>>> /opt/capitati/ge2011.11/smartmate/spool/exec-1/job_scripts/34, 0); >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: pid=1487 pgrp=1487 sid=1487 old >>>>>>>>> pgrp=1486 getlogin()=<no login set> >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: parent: job-pid: 1487 >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: reading passwd information for user >>>>>>>>> 'smartmate' >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: setosjobid: uid = 0, euid = 0 >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: setting limits >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_CPU setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_FSIZE setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_DATA setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_STACK setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_CORE setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_VMEM/RLIMIT_AS setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: RLIMIT_RSS setting: (soft >>>>>>>>> 18446744073709551615(INFINITY), hard 18446744073709551615(INFINITY)) >>>>>>>>> resulting: (soft 18446744073709551615(INFINITY), hard >>>>>>>>> 18446744073709551615(INFINITY)) >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: setting environment >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: Initializing error file >>>>>>>>> 01/20/2014 11:02:12 [0:1487]: switching to intermediate/target user >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: wait3 returned 1487 (status: 6656; >>>>>>>>> WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 26) >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: job exited with exit status 26 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: reaped "job" with pid 1487 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: job exited not due to signal >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: job exited with status 26 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: now sending signal KILL to pid -1487 >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: writing usage file to "usage" >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: no tasker to notify >>>>>>>>> 01/20/2014 11:02:12 [0:1486]: no epilog script to start >>>>>>>>> </shepherd_trace> >>>>>>>>> >>>>>>>>> <job_script> >>>>>>>>> #!/bin/bash >>>>>>>>> # >>>>>>>>> #$ -j y >>>>>>>>> #$ -o /opt/capitati/smartmate_data/test/job_sm_out.log >>>>>>>>> #$ -e /opt/capitati/smartmate_data/test/job_sm_err.log >>>>>>>>> #$ -S /bin/bash >>>>>>>>> >>>>>>>>> echo "Hello World" >>>>>>>>> echo `date` >>>>>>>>> </job_script> >>>>>>>>> >>>>>>>>> Ian Johnson >>>>>>>>> Software Engineer >>>>>>>>> >>>>>>>>> >>>>>>>>> Capita Translation and Interpreting >>>>>>>>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel >>>>>>>>> (UK): +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>>>>>> | [email protected] | Skype ID: ian.johnson_als >>>>>>>>> www.capitatranslationinterpreting.com >>>>>>>>> >>>>>>>>> >>>>>>>>> On 14 January 2014 18:34, Reuti <[email protected]> wrote: >>>>>>>>> Am 14.01.2014 um 18:27 schrieb Ian Johnson: >>>>>>>>> >>>>>>>>> > Reuti, >>>>>>>>> > >>>>>>>>> > There's no file staging installed. The job script is being copied >>>>>>>>> > to the execution host. >>>>>>>>> >>>>>>>>> Correct (for the job script itself). >>>>>>>>> >>>>>>>>> >>>>>>>>> > The output file *is* being opened in ~smartmate but it is of zero >>>>>>>>> > length. >>>>>>>>> >>>>>>>>> I would assume that they is not created at all in this location, only >>>>>>>>> on the nodes. Or do you mean the home directory on the nodes? >>>>>>>>> >>>>>>>>> NB: In Torque there is a file staging for the .o/.e files, but not in >>>>>>>>> SGE. >>>>>>>>> >>>>>>>>> -- Reuti >>>>>>>>> >>>>>>>>> >>>>>>>>> > Thanks, >>>>>>>>> > >>>>>>>>> > Ian >>>>>>>>> > >>>>>>>>> > On Tue, 14 Jan 2014 17:18:06 -0000, Reuti >>>>>>>>> > <[email protected]> wrote: >>>>>>>>> > >>>>>>>>> >> Am 14.01.2014 um 18:04 schrieb Ian Johnson: >>>>>>>>> >> >>>>>>>>> >>> Reuti, >>>>>>>>> >>> >>>>>>>>> >>> There is no output from the script at all in the >>>>>>>>> >>> ~smartmate/job.sh.o[0-9]+ files. The home directory of the >>>>>>>>> >>> smartmate user is local disk. However, grid engine is installed >>>>>>>>> >>> on an NFS share. >>>>>>>>> >> >>>>>>>>> >> Do you have any file staging installed? Otherwise the output will >>>>>>>>> >> not be send to the real home directory of the user. Also the input >>>>>>>>> >> files could be missing on the execution host. >>>>>>>>> >> >>>>>>>>> >> -- Reuti >>>>>>>>> >> >>>>>>>>> >> >>>>>>>>> >> >>>>>>>>> >>> Is there other information you require? Is there any way to get >>>>>>>>> >>> the function call that is failing in shepherd, e.g. more verbose >>>>>>>>> >>> tracing? >>>>>>>>> >>> >>>>>>>>> >>> Thanks, >>>>>>>>> >>> >>>>>>>>> >>> Ian >>>>>>>>> >>> >>>>>>>>> >>> On Tue, 14 Jan 2014 15:19:34 -0000, Reuti >>>>>>>>> >>> <[email protected]> wrote: >>>>>>>>> >>> >>>>>>>>> >>>> Hi, >>>>>>>>> >>>> >>>>>>>>> >>>> Am 14.01.2014 um 15:19 schrieb Ian Johnson: >>>>>>>>> >>>> >>>>>>>>> >>>>> I have a simple job, which echoes `date` to stdout, that I'm >>>>>>>>> >>>>> using to test an Open Grid Engine installation. Running qsub as >>>>>>>>> >>>>> root the job is run successfully. However, using another >>>>>>>>> >>>>> non-superuser, in this case smartmate user, the output from >>>>>>>>> >>>>> qacct -j says that the job has exited with exit status 11. The >>>>>>>>> >>>>> shepherd trace confirms this (see below). >>>>>>>>> >>>> >>>>>>>>> >>>> Do you have any output? 11 means "Resource temporarily >>>>>>>>> >>>> unavailable", which could mean it can't write to the (mounted?) >>>>>>>>> >>>> home directory of the user. How is it mount configured? >>>>>>>>> >>>> >>>>>>>>> >>>> AFAICS the user is known, as otherwise you would face a >>>>>>>>> >>>> different error. >>>>>>>>> >>>> >>>>>>>>> >>>> -- Reuti >>>>>>>>> >>>> >>>>>>>>> >>>> >>>>>>>>> >>>>> Would anyone have an idea as to what is going on? Thank you. >>>>>>>>> >>>>> >>>>>>>>> >>>>> <shepherd_trace> >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: shepherd called with uid = 0, >>>>>>>>> >>>>> euid = 0 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: starting up 2011.11 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: setpgid(2723, 2723) returned 0 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: do_core_binding: "binding" >>>>>>>>> >>>>> parameter not found in config file >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: no prolog script to start >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: parent: forked "job" with pid 2724 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: child: starting son(job, >>>>>>>>> >>>>> /opt/capitati/ge2011.11/smartmate/spool/exec-1/job_scripts/32, >>>>>>>>> >>>>> 0); >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: pid=2724 pgrp=2724 sid=2724 old >>>>>>>>> >>>>> pgrp=2723 getlogin()=root >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: parent: job-pid: 2724 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: reading passwd information for >>>>>>>>> >>>>> user 'smartmate' >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: setosjobid: uid = 0, euid = 0 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: setting limits >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_CPU setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_FSIZE setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_DATA setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_STACK setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_CORE setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_VMEM/RLIMIT_AS setting: >>>>>>>>> >>>>> (soft 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: RLIMIT_RSS setting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) resulting: (soft >>>>>>>>> >>>>> 18446744073709551615(INFINITY), hard >>>>>>>>> >>>>> 18446744073709551615(INFINITY)) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: setting environment >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: Initializing error file >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2724]: switching to intermediate/target >>>>>>>>> >>>>> user >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: wait3 returned 2724 (status: >>>>>>>>> >>>>> 2816; WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 11) >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited with exit status 11 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: reaped "job" with pid 2724 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited not due to signal >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: job exited with status 11 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: now sending signal KILL to pid >>>>>>>>> >>>>> -2724 >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: writing usage file to "usage" >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: no tasker to notify >>>>>>>>> >>>>> 01/14/2014 14:08:56 [0:2723]: no epilog script to start >>>>>>>>> >>>>> </shepherd_trace> >>>>>>>>> >>>>> >>>>>>>>> >>>>> <job_script> >>>>>>>>> >>>>> #!/bin/bash >>>>>>>>> >>>>> # >>>>>>>>> >>>>> #$ -j y >>>>>>>>> >>>>> # >>>>>>>>> >>>>> #$ -S /bin/bash >>>>>>>>> >>>>> >>>>>>>>> >>>>> echo "Hello World" >>>>>>>>> >>>>> echo `date` >>>>>>>>> >>>>> </job_script> >>>>>>>>> >>>>> >>>>>>>>> >>>>> Ian Johnson >>>>>>>>> >>>>> Software Engineer >>>>>>>>> >>>>> >>>>>>>>> >>>>> >>>>>>>>> >>>>> Capita Translation and Interpreting >>>>>>>>> >>>>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | >>>>>>>>> >>>>> Tel (UK): +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>>>>>> >>>>> | [email protected] | Skype ID: ian.johnson_als >>>>>>>>> >>>>> www.capitatranslationinterpreting.com >>>>>>>>> >>>>> _______________________________________________ >>>>>>>>> >>>>> users mailing list >>>>>>>>> >>>>> [email protected] >>>>>>>>> >>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>> >>>> >>>>>>>>> >>> >>>>>>>>> >>> >>>>>>>>> >>> -- >>>>>>>>> >>> Kind regards, >>>>>>>>> >>> >>>>>>>>> >>> Ian Johnson >>>>>>>>> >>> Software Engineer >>>>>>>>> >>> >>>>>>>>> >>> Capita Translation and Interpreting >>>>>>>>> >>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel >>>>>>>>> >>> (UK): +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>>>>>> >>> | [email protected] | Skype ID: ian.johnson_als >>>>>>>>> >>> www.capitatranslationinterpreting.com >>>>>>>>> >> >>>>>>>>> > >>>>>>>>> > >>>>>>>>> > -- >>>>>>>>> > Kind regards, >>>>>>>>> > >>>>>>>>> > Ian Johnson >>>>>>>>> > Software Engineer >>>>>>>>> > >>>>>>>>> > Capita Translation and Interpreting >>>>>>>>> > Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel >>>>>>>>> > (UK): +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>>>>>> > | [email protected] | Skype ID: ian.johnson_als >>>>>>>>> > www.capitatranslationinterpreting.com >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Kind regards, >>>>>>> >>>>>>> Ian Johnson >>>>>>> Software Engineer >>>>>>> >>>>>>> Capita Translation and Interpreting >>>>>>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): >>>>>>> +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>>>> | [email protected] | Skype ID: ian.johnson_als >>>>>>> www.capitatranslationinterpreting.com >>>>>> >>>>> >>>>> >>>>> -- >>>>> Kind regards, >>>>> >>>>> Ian Johnson >>>>> Software Engineer >>>>> >>>>> Capita Translation and Interpreting >>>>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): >>>>> +44 845 367 7000 | Tel (US): +1 (800) 579-5010 >>>>> | [email protected] | Skype ID: ian.johnson_als >>>>> www.capitatranslationinterpreting.com >>>> >>> >>> >>> -- >>> Kind regards, >>> >>> Ian Johnson >>> Software Engineer >>> >>> Capita Translation and Interpreting >>> Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): +44 >>> 845 367 7000 | Tel (US): +1 (800) 579-5010 >>> | [email protected] | Skype ID: ian.johnson_als >>> www.capitatranslationinterpreting.com >> > > > -- > Kind regards, > > Ian Johnson > Software Engineer > > Capita Translation and Interpreting > Riverside Court, Huddersfield Road, Delph, Oldham, OL3 5FZ | Tel (UK): +44 > 845 367 7000 | Tel (US): +1 (800) 579-5010 > | [email protected] | Skype ID: ian.johnson_als > www.capitatranslationinterpreting.com _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
