I changes PROCESSORS to UNDEFINED still same error
abhinav@abhnav:~$ qsub script.sh
Unable to run job: warning: abhinav your job is not allowed to run in any queue
Your job 22 ("script.sh") has been submitted.
Exiting.On Wed, Mar 19, 2014 at 8:33 PM, Reuti <[email protected]> wrote: > Am 19.03.2014 um 15:55 schrieb Abhinav Mittal: > >> I remember manipulating using qmon as suggested here :- >> http://scidom.wordpress.com/category/software/sge/ > > AFAICS this setting would bind all slots to core 2 of a machine under Solaris > (i.e. one core). > > In case you have a dual core machine, it's necessary to set slots to two > instead. > > >> Is there a way >> to revert back ? > > Yes, set it to UNDEFINED again. > > Either in `qmon` or with `qconf -mq New` > > -- Reuti > > >> or I will have to make changes manually ? >> >> On Wed, Mar 19, 2014 at 7:22 PM, Reuti <[email protected]> wrote: >>> Please keep the list posted! >>> >>> Am 19.03.2014 um 14:36 schrieb Abhinav Mittal: >>> >>>> abhinav@abhnav:~$ qconf -sq New >>>> qname New >>>> hostlist abhnav >>>> seq_no 0 >>>> load_thresholds np_load_avg=1.75 >>>> suspend_thresholds NONE >>>> nsuspend 1 >>>> suspend_interval 00:05:00 >>>> priority 0 >>>> min_cpu_interval 00:05:00 >>>> processors 2 >>> >>> Most likely this should be set to UNDEFINED unless you are running one of >>> the supported OS for this option. >>> >>> Please have a look at `man queue_conf` for an explanation. >>> >>> -- Reuti >>> >>> >>>> qtype BATCH INTERACTIVE >>>> ckpt_list NONE >>>> pe_list make >>>> rerun FALSE >>>> slots 1 >>>> tmpdir /tmp >>>> shell /bin/csh >>>> prolog NONE >>>> epilog NONE >>>> shell_start_mode posix_compliant >>>> starter_method NONE >>>> suspend_method NONE >>>> resume_method NONE >>>> terminate_method NONE >>>> notify 00:00:60 >>>> owner_list NONE >>>> user_lists arusers >>>> xuser_lists NONE >>>> subordinate_list NONE >>>> complex_values NONE >>>> projects NONE >>>> xprojects NONE >>>> calendar NONE >>>> initial_state default >>>> s_rt INFINITY >>>> h_rt INFINITY >>>> s_cpu INFINITY >>>> h_cpu INFINITY >>>> s_fsize INFINITY >>>> h_fsize INFINITY >>>> s_data INFINITY >>>> h_data INFINITY >>>> s_stack INFINITY >>>> h_stack INFINITY >>>> s_core INFINITY >>>> h_core INFINITY >>>> s_rss INFINITY >>>> h_rss INFINITY >>>> s_vmem INFINITY >>>> h_vmem INFINITY >>>> >>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]> wrote: >>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: >>>>> >>>>>> -------------------------------------------------------------------------------------------------------------------------------- >>>>>> abhinav@abhnav:~$ qconf -sel >>>>>> abhnav >>>>>> abhinav@abhnav:~$ qconf -sql >>>>>> New >>>>>> abhinav@abhnav:~$ qconf -sconf >>>>>> #global: >>>>>> execd_spool_dir /var/spool/gridengine/execd >>>>>> mailer /usr/bin/mail >>>>>> xterm /usr/bin/xterm >>>>>> load_sensor none >>>>>> prolog none >>>>>> epilog none >>>>>> shell_start_mode posix_compliant >>>>>> login_shells bash,sh,ksh,csh,tcsh >>>>>> min_uid 0 >>>>>> min_gid 0 >>>>>> user_lists none >>>>>> xuser_lists none >>>>>> projects none >>>>>> xprojects none >>>>>> enforce_project false >>>>>> enforce_user auto >>>>>> load_report_time 00:00:40 >>>>>> max_unheard 00:05:00 >>>>>> reschedule_unknown 00:00:00 >>>>>> loglevel log_warning >>>>> >>>>> This I suggest to change to: >>>>> >>>>> loglevel log_info >>>>> >>>>> >>>>>> administrator_mail root >>>>>> set_token_cmd none >>>>>> pag_cmd none >>>>>> token_extend_time none >>>>>> shepherd_cmd none >>>>>> qmaster_params none >>>>>> execd_params none >>>>>> reporting_params accounting=true reporting=false \ >>>>>> flush_time=00:00:15 joblog=false >>>>>> sharelog=00:00:00 >>>>>> finished_jobs 100 >>>>>> gid_range 65400-65500 >>>>>> max_aj_instances 2000 >>>>>> max_aj_tasks 75000 >>>>>> max_u_jobs 0 >>>>>> max_jobs 0 >>>>>> auto_user_oticket 0 >>>>>> auto_user_fshare 0 >>>>>> auto_user_default_project none >>>>>> auto_user_delete_time 86400 >>>>>> delegated_file_staging false >>>>>> reprioritize 0 >>>>>> rlogin_daemon /usr/sbin/sshd -i >>>>>> rlogin_command /usr/bin/ssh >>>>>> qlogin_daemon /usr/sbin/sshd -i >>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper >>>>>> rsh_daemon /usr/sbin/sshd -i >>>>>> rsh_command /usr/bin/ssh >>>>> >>>>> Did you set this up? The default is to use the builtin tools for the >>>>> commands above. >>>>> >>>>> >>>>>> jsv_url none >>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >>>>> >>>>> Fine. >>>>> >>>>> >>>>>> abhinav@abhnav:~$ qstat -f >>>>>> queuename qtype resv/used/tot. load_avg arch >>>>>> states >>>>>> --------------------------------------------------------------------------------- >>>>>> New@abhnav BIP 0/0/1 0.68 lx26-amd64 >>>>>> >>>>>> ############################################################################ >>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING >>>>>> JOBS >>>>>> ############################################################################ >>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 >>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 >>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 >>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 >>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 >>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 >>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 >>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 >>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 >>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 >>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 >>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 >>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 >>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 >>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 >>>>> >>>>> So, what does the queue look like: >>>>> >>>>> $ qconf -sq New >>>>> >>>>> -- Reuti >>>>> >>>>> >>>>>> abhinav@abhnav:~$ hostname >>>>>> abhnav >>>>>> >>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]> >>>>>> wrote: >>>>>>> >>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >>>>>>> >>>>>>>> Not working >>>>>>>> >>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>> abhnav >>>>>>>> localhost >>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>> abhnav >>>>>>>> abhinav@abhnav:~$ qsub script.sh >>>>>>>> Unable to run job: warning: abhinav your job is not allowed to run in >>>>>>>> any queue >>>>>>>> Your job 18 ("script.sh") has been submitted. >>>>>>>> Exiting. >>>>>>>> >>>>>>>> Same for qsub -b y as well >>>>>>>> >>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti <[email protected]> >>>>>>>> wrote: >>>>>>>>> Hi, >>>>>>>>> >>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>>>>>>> >>>>>>>>>> I am trying to run a software called >>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>>>>>>> >>>>>>>>> Before looking into any application specific problems: is a simple >>>>>>>>> script echo'ing "Hello World" working? Can you submit a binary with >>>>>>>>> `qsub -b y hostname` too? >>>>>>>>> >>>>>>>>> -- Reuti >>>>>>>>> >>>>>>>>> >>>>>>>>>> and getting an error "your job is not allowed to run in any que". >>>>>>>>>> submit host : localhost , abhnav >>>>>>>>>> hostname : abhnav >>>>>>>>>> Still I am getting this error >>>>>>>>>> Please help. >>>>>>>>>> >>>>>>>>>> ----------------------------------------------------------------------------------------------------------------- >>>>>>>>>> >>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata >>>>>>>>>> traindir >>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday March 19 >>>>>>>>>> 2014, 16:06:01 IST ____ >>>>>>>>>> Traceback (most recent call last): >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in >>>>>>>>>> <module> >>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')() >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 3592, in main >>>>>>>>>> return runner() >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 3429, in __call__ >>>>>>>>>> self.run(*args, **kwargs) >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 3407, in run >>>>>>>>>> self.run_train() >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 3038, in run_train >>>>>>>>>> instance_params = run_train_func(num_segs_range) >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 3056, in run_train_singlethread >>>>>>>>>> res = [self.run_train_instance()] >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 2937, in run_train_instance >>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 2899, in run_train_round >>>>>>>>>> round_index, **kwargs) >>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>> line 2770, in queue_train_parallel >>>>>>>>>> res.queue(restartable_job) >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>> line 174, in queue >>>>>>>>>> self._queue_unconditional(restartable_job) >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>> line 164, in _queue_unconditional >>>>>>>>>> jobid = restartable_job.run() >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>> line 116, in run >>>>>>>>>> res = self.session.runJob(job_template) >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>>>>>>> line 314, in runJob >>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>>>>>>> line 299, in c >>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>>>>>>> File >>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>>>>>>> line 151, in error_check >>>>>>>>>> raise _ERRORS[code - 1](error_string) >>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav your job >>>>>>>>>> is not allowed to run in any queue >>>>>>>>>> Your job 15 ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") >>>>>>>>>> has >>>>>>>>>> been submitted >>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>> abhnav >>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>> abhnav >>>>>>>>>> localhost >>>>>>>>>> _______________________________________________ >>>>>>>>>> users mailing list >>>>>>>>>> [email protected] >>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> users mailing list >>>>>>> [email protected] >>>>>>> https://gridengine.org/mailman/listinfo/users >>>>> >>> > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
