abhinav@abhnav:~$ whoami abhinav abhinav@abhnav:~$ hostname abhnav
On Wed, Mar 19, 2014 at 8:39 PM, Abhinav Mittal <[email protected]> wrote: > I changes PROCESSORS to UNDEFINED still same error > abhinav@abhnav:~$ qsub script.sh > Unable to run job: warning: abhinav your job is not allowed to run in any > queue > Your job 22 ("script.sh") has been submitted. > Exiting. > > On Wed, Mar 19, 2014 at 8:33 PM, Reuti <[email protected]> wrote: >> Am 19.03.2014 um 15:55 schrieb Abhinav Mittal: >> >>> I remember manipulating using qmon as suggested here :- >>> http://scidom.wordpress.com/category/software/sge/ >> >> AFAICS this setting would bind all slots to core 2 of a machine under >> Solaris (i.e. one core). >> >> In case you have a dual core machine, it's necessary to set slots to two >> instead. >> >> >>> Is there a way >>> to revert back ? >> >> Yes, set it to UNDEFINED again. >> >> Either in `qmon` or with `qconf -mq New` >> >> -- Reuti >> >> >>> or I will have to make changes manually ? >>> >>> On Wed, Mar 19, 2014 at 7:22 PM, Reuti <[email protected]> wrote: >>>> Please keep the list posted! >>>> >>>> Am 19.03.2014 um 14:36 schrieb Abhinav Mittal: >>>> >>>>> abhinav@abhnav:~$ qconf -sq New >>>>> qname New >>>>> hostlist abhnav >>>>> seq_no 0 >>>>> load_thresholds np_load_avg=1.75 >>>>> suspend_thresholds NONE >>>>> nsuspend 1 >>>>> suspend_interval 00:05:00 >>>>> priority 0 >>>>> min_cpu_interval 00:05:00 >>>>> processors 2 >>>> >>>> Most likely this should be set to UNDEFINED unless you are running one of >>>> the supported OS for this option. >>>> >>>> Please have a look at `man queue_conf` for an explanation. >>>> >>>> -- Reuti >>>> >>>> >>>>> qtype BATCH INTERACTIVE >>>>> ckpt_list NONE >>>>> pe_list make >>>>> rerun FALSE >>>>> slots 1 >>>>> tmpdir /tmp >>>>> shell /bin/csh >>>>> prolog NONE >>>>> epilog NONE >>>>> shell_start_mode posix_compliant >>>>> starter_method NONE >>>>> suspend_method NONE >>>>> resume_method NONE >>>>> terminate_method NONE >>>>> notify 00:00:60 >>>>> owner_list NONE >>>>> user_lists arusers >>>>> xuser_lists NONE >>>>> subordinate_list NONE >>>>> complex_values NONE >>>>> projects NONE >>>>> xprojects NONE >>>>> calendar NONE >>>>> initial_state default >>>>> s_rt INFINITY >>>>> h_rt INFINITY >>>>> s_cpu INFINITY >>>>> h_cpu INFINITY >>>>> s_fsize INFINITY >>>>> h_fsize INFINITY >>>>> s_data INFINITY >>>>> h_data INFINITY >>>>> s_stack INFINITY >>>>> h_stack INFINITY >>>>> s_core INFINITY >>>>> h_core INFINITY >>>>> s_rss INFINITY >>>>> h_rss INFINITY >>>>> s_vmem INFINITY >>>>> h_vmem INFINITY >>>>> >>>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]> wrote: >>>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal: >>>>>> >>>>>>> -------------------------------------------------------------------------------------------------------------------------------- >>>>>>> abhinav@abhnav:~$ qconf -sel >>>>>>> abhnav >>>>>>> abhinav@abhnav:~$ qconf -sql >>>>>>> New >>>>>>> abhinav@abhnav:~$ qconf -sconf >>>>>>> #global: >>>>>>> execd_spool_dir /var/spool/gridengine/execd >>>>>>> mailer /usr/bin/mail >>>>>>> xterm /usr/bin/xterm >>>>>>> load_sensor none >>>>>>> prolog none >>>>>>> epilog none >>>>>>> shell_start_mode posix_compliant >>>>>>> login_shells bash,sh,ksh,csh,tcsh >>>>>>> min_uid 0 >>>>>>> min_gid 0 >>>>>>> user_lists none >>>>>>> xuser_lists none >>>>>>> projects none >>>>>>> xprojects none >>>>>>> enforce_project false >>>>>>> enforce_user auto >>>>>>> load_report_time 00:00:40 >>>>>>> max_unheard 00:05:00 >>>>>>> reschedule_unknown 00:00:00 >>>>>>> loglevel log_warning >>>>>> >>>>>> This I suggest to change to: >>>>>> >>>>>> loglevel log_info >>>>>> >>>>>> >>>>>>> administrator_mail root >>>>>>> set_token_cmd none >>>>>>> pag_cmd none >>>>>>> token_extend_time none >>>>>>> shepherd_cmd none >>>>>>> qmaster_params none >>>>>>> execd_params none >>>>>>> reporting_params accounting=true reporting=false \ >>>>>>> flush_time=00:00:15 joblog=false >>>>>>> sharelog=00:00:00 >>>>>>> finished_jobs 100 >>>>>>> gid_range 65400-65500 >>>>>>> max_aj_instances 2000 >>>>>>> max_aj_tasks 75000 >>>>>>> max_u_jobs 0 >>>>>>> max_jobs 0 >>>>>>> auto_user_oticket 0 >>>>>>> auto_user_fshare 0 >>>>>>> auto_user_default_project none >>>>>>> auto_user_delete_time 86400 >>>>>>> delegated_file_staging false >>>>>>> reprioritize 0 >>>>>>> rlogin_daemon /usr/sbin/sshd -i >>>>>>> rlogin_command /usr/bin/ssh >>>>>>> qlogin_daemon /usr/sbin/sshd -i >>>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper >>>>>>> rsh_daemon /usr/sbin/sshd -i >>>>>>> rsh_command /usr/bin/ssh >>>>>> >>>>>> Did you set this up? The default is to use the builtin tools for the >>>>>> commands above. >>>>>> >>>>>> >>>>>>> jsv_url none >>>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w >>>>>> >>>>>> Fine. >>>>>> >>>>>> >>>>>>> abhinav@abhnav:~$ qstat -f >>>>>>> queuename qtype resv/used/tot. load_avg arch >>>>>>> states >>>>>>> --------------------------------------------------------------------------------- >>>>>>> New@abhnav BIP 0/0/1 0.68 lx26-amd64 >>>>>>> >>>>>>> ############################################################################ >>>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING >>>>>>> JOBS >>>>>>> ############################################################################ >>>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1 >>>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1 >>>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1 >>>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1 >>>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1 >>>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1 >>>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1 >>>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1 >>>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1 >>>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1 >>>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1 >>>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1 >>>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1 >>>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1 >>>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1 >>>>>> >>>>>> So, what does the queue look like: >>>>>> >>>>>> $ qconf -sq New >>>>>> >>>>>> -- Reuti >>>>>> >>>>>> >>>>>>> abhinav@abhnav:~$ hostname >>>>>>> abhnav >>>>>>> >>>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]> >>>>>>> wrote: >>>>>>>> >>>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal: >>>>>>>> >>>>>>>>> Not working >>>>>>>>> >>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>> abhnav >>>>>>>>> localhost >>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>> abhnav >>>>>>>>> abhinav@abhnav:~$ qsub script.sh >>>>>>>>> Unable to run job: warning: abhinav your job is not allowed to run in >>>>>>>>> any queue >>>>>>>>> Your job 18 ("script.sh") has been submitted. >>>>>>>>> Exiting. >>>>>>>>> >>>>>>>>> Same for qsub -b y as well >>>>>>>>> >>>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti <[email protected]> >>>>>>>>> wrote: >>>>>>>>>> Hi, >>>>>>>>>> >>>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal: >>>>>>>>>> >>>>>>>>>>> I am trying to run a software called >>>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html) >>>>>>>>>> >>>>>>>>>> Before looking into any application specific problems: is a simple >>>>>>>>>> script echo'ing "Hello World" working? Can you submit a binary with >>>>>>>>>> `qsub -b y hostname` too? >>>>>>>>>> >>>>>>>>>> -- Reuti >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> and getting an error "your job is not allowed to run in any que". >>>>>>>>>>> submit host : localhost , abhnav >>>>>>>>>>> hostname : abhnav >>>>>>>>>>> Still I am getting this error >>>>>>>>>>> Please help. >>>>>>>>>>> >>>>>>>>>>> ----------------------------------------------------------------------------------------------------------------- >>>>>>>>>>> >>>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata >>>>>>>>>>> traindir >>>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548) >>>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday March 19 >>>>>>>>>>> 2014, 16:06:01 IST ____ >>>>>>>>>>> Traceback (most recent call last): >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in >>>>>>>>>>> <module> >>>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')() >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 3592, in main >>>>>>>>>>> return runner() >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 3429, in __call__ >>>>>>>>>>> self.run(*args, **kwargs) >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 3407, in run >>>>>>>>>>> self.run_train() >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 3038, in run_train >>>>>>>>>>> instance_params = run_train_func(num_segs_range) >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 3056, in run_train_singlethread >>>>>>>>>>> res = [self.run_train_instance()] >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 2937, in run_train_instance >>>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs) >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 2899, in run_train_round >>>>>>>>>>> round_index, **kwargs) >>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py", >>>>>>>>>>> line 2770, in queue_train_parallel >>>>>>>>>>> res.queue(restartable_job) >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>> line 174, in queue >>>>>>>>>>> self._queue_unconditional(restartable_job) >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>> line 164, in _queue_unconditional >>>>>>>>>>> jobid = restartable_job.run() >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py", >>>>>>>>>>> line 116, in run >>>>>>>>>>> res = self.session.runJob(job_template) >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py", >>>>>>>>>>> line 314, in runJob >>>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate) >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py", >>>>>>>>>>> line 299, in c >>>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer)))) >>>>>>>>>>> File >>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py", >>>>>>>>>>> line 151, in error_check >>>>>>>>>>> raise _ERRORS[code - 1](error_string) >>>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav your >>>>>>>>>>> job >>>>>>>>>>> is not allowed to run in any queue >>>>>>>>>>> Your job 15 ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") >>>>>>>>>>> has >>>>>>>>>>> been submitted >>>>>>>>>>> abhinav@abhnav:~$ hostname >>>>>>>>>>> abhnav >>>>>>>>>>> abhinav@abhnav:~$ qconf -ss >>>>>>>>>>> abhnav >>>>>>>>>>> localhost >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> users mailing list >>>>>>>>>>> [email protected] >>>>>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> users mailing list >>>>>>>> [email protected] >>>>>>>> https://gridengine.org/mailman/listinfo/users >>>>>> >>>> >> _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
