Still ......
abhinav@abhnav:~$ qconf -sql
New
abhinav@abhnav:~$ qconf -sel
abhnav
localhost
abhinav@abhnav:~$ qconf -sconf
#global:
execd_spool_dir /var/spool/gridengine/execd
mailer /usr/bin/mail
xterm /usr/bin/xterm
load_sensor none
prolog none
epilog none
shell_start_mode posix_compliant
login_shells bash,sh,ksh,csh,tcsh
min_uid 0
min_gid 0
user_lists none
xuser_lists none
projects none
xprojects none
enforce_project false
enforce_user auto
load_report_time 00:00:40
max_unheard 00:05:00
reschedule_unknown 00:00:00
loglevel log_warning
administrator_mail root
set_token_cmd none
pag_cmd none
token_extend_time none
shepherd_cmd none
qmaster_params none
execd_params none
reporting_params accounting=true reporting=false \
flush_time=00:00:15 joblog=false sharelog=00:00:00
finished_jobs 100
gid_range 65400-65500
max_aj_instances 2000
max_aj_tasks 75000
max_u_jobs 0
max_jobs 0
auto_user_oticket 0
auto_user_fshare 0
auto_user_default_project none
auto_user_delete_time 86400
delegated_file_staging false
reprioritize 0
rlogin_daemon /usr/sbin/sshd -i
rlogin_command /usr/bin/ssh
qlogin_daemon /usr/sbin/sshd -i
qlogin_command /usr/share/gridengine/qlogin-wrapper
rsh_daemon /usr/sbin/sshd -i
rsh_command /usr/bin/ssh
jsv_url none
jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w
abhinav@abhnav:~$ qsub script.sh
Unable to run job: warning: abhinav your job is not allowed to run in any queue
Your job 29 ("script.sh") has been submitted.
Exiting.
On Wed, Mar 19, 2014 at 10:11 PM, Reuti <[email protected]> wrote:
> Am 19.03.2014 um 16:34 schrieb Abhinav Mittal:
>
>> YES abhnav and abhinav are different!
>
> Ok.
>
>> On Wed, Mar 19, 2014 at 9:00 PM, Reuti <[email protected]> wrote:
>>>>>>>>> <snip>
>>>>>>>>> user_lists arusers
>
> Why are "arusers" set here? By default this is empty.
>
> $ qconf -su arusers
>
> Either set it to NONE or attach yourself to the list.
>
> -- Reuti
>
>
>>>>>>>>> xuser_lists NONE
>>>>>>>>> subordinate_list NONE
>>>>>>>>> complex_values NONE
>>>>>>>>> projects NONE
>>>>>>>>> xprojects NONE
>>>>>>>>> calendar NONE
>>>>>>>>> initial_state default
>>>>>>>>> s_rt INFINITY
>>>>>>>>> h_rt INFINITY
>>>>>>>>> s_cpu INFINITY
>>>>>>>>> h_cpu INFINITY
>>>>>>>>> s_fsize INFINITY
>>>>>>>>> h_fsize INFINITY
>>>>>>>>> s_data INFINITY
>>>>>>>>> h_data INFINITY
>>>>>>>>> s_stack INFINITY
>>>>>>>>> h_stack INFINITY
>>>>>>>>> s_core INFINITY
>>>>>>>>> h_core INFINITY
>>>>>>>>> s_rss INFINITY
>>>>>>>>> h_rss INFINITY
>>>>>>>>> s_vmem INFINITY
>>>>>>>>> h_vmem INFINITY
>>>>>>>>>
>>>>>>>>> On Wed, Mar 19, 2014 at 6:54 PM, Reuti <[email protected]>
>>>>>>>>> wrote:
>>>>>>>>>> Am 19.03.2014 um 14:02 schrieb Abhinav Mittal:
>>>>>>>>>>
>>>>>>>>>>> --------------------------------------------------------------------------------------------------------------------------------
>>>>>>>>>>> abhinav@abhnav:~$ qconf -sel
>>>>>>>>>>> abhnav
>>>>>>>>>>> abhinav@abhnav:~$ qconf -sql
>>>>>>>>>>> New
>>>>>>>>>>> abhinav@abhnav:~$ qconf -sconf
>>>>>>>>>>> #global:
>>>>>>>>>>> execd_spool_dir /var/spool/gridengine/execd
>>>>>>>>>>> mailer /usr/bin/mail
>>>>>>>>>>> xterm /usr/bin/xterm
>>>>>>>>>>> load_sensor none
>>>>>>>>>>> prolog none
>>>>>>>>>>> epilog none
>>>>>>>>>>> shell_start_mode posix_compliant
>>>>>>>>>>> login_shells bash,sh,ksh,csh,tcsh
>>>>>>>>>>> min_uid 0
>>>>>>>>>>> min_gid 0
>>>>>>>>>>> user_lists none
>>>>>>>>>>> xuser_lists none
>>>>>>>>>>> projects none
>>>>>>>>>>> xprojects none
>>>>>>>>>>> enforce_project false
>>>>>>>>>>> enforce_user auto
>>>>>>>>>>> load_report_time 00:00:40
>>>>>>>>>>> max_unheard 00:05:00
>>>>>>>>>>> reschedule_unknown 00:00:00
>>>>>>>>>>> loglevel log_warning
>>>>>>>>>>
>>>>>>>>>> This I suggest to change to:
>>>>>>>>>>
>>>>>>>>>> loglevel log_info
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> administrator_mail root
>>>>>>>>>>> set_token_cmd none
>>>>>>>>>>> pag_cmd none
>>>>>>>>>>> token_extend_time none
>>>>>>>>>>> shepherd_cmd none
>>>>>>>>>>> qmaster_params none
>>>>>>>>>>> execd_params none
>>>>>>>>>>> reporting_params accounting=true reporting=false \
>>>>>>>>>>> flush_time=00:00:15 joblog=false
>>>>>>>>>>> sharelog=00:00:00
>>>>>>>>>>> finished_jobs 100
>>>>>>>>>>> gid_range 65400-65500
>>>>>>>>>>> max_aj_instances 2000
>>>>>>>>>>> max_aj_tasks 75000
>>>>>>>>>>> max_u_jobs 0
>>>>>>>>>>> max_jobs 0
>>>>>>>>>>> auto_user_oticket 0
>>>>>>>>>>> auto_user_fshare 0
>>>>>>>>>>> auto_user_default_project none
>>>>>>>>>>> auto_user_delete_time 86400
>>>>>>>>>>> delegated_file_staging false
>>>>>>>>>>> reprioritize 0
>>>>>>>>>>> rlogin_daemon /usr/sbin/sshd -i
>>>>>>>>>>> rlogin_command /usr/bin/ssh
>>>>>>>>>>> qlogin_daemon /usr/sbin/sshd -i
>>>>>>>>>>> qlogin_command /usr/share/gridengine/qlogin-wrapper
>>>>>>>>>>> rsh_daemon /usr/sbin/sshd -i
>>>>>>>>>>> rsh_command /usr/bin/ssh
>>>>>>>>>>
>>>>>>>>>> Did you set this up? The default is to use the builtin tools for the
>>>>>>>>>> commands above.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> jsv_url none
>>>>>>>>>>> jsv_allowed_mod ac,h,i,e,o,j,M,N,p,w
>>>>>>>>>>
>>>>>>>>>> Fine.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> abhinav@abhnav:~$ qstat -f
>>>>>>>>>>> queuename qtype resv/used/tot. load_avg arch
>>>>>>>>>>> states
>>>>>>>>>>> ---------------------------------------------------------------------------------
>>>>>>>>>>> New@abhnav BIP 0/0/1 0.68
>>>>>>>>>>> lx26-amd64
>>>>>>>>>>>
>>>>>>>>>>> ############################################################################
>>>>>>>>>>> - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS -
>>>>>>>>>>> PENDING JOBS
>>>>>>>>>>> ############################################################################
>>>>>>>>>>> 3 0.75000 emt0.0.0.t abhinav qw 03/16/2014 00:54:30 1
>>>>>>>>>>> 5 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:44:02 1
>>>>>>>>>>> 6 0.75000 emt0.0.0.t abhinav qw 03/16/2014 07:46:05 1
>>>>>>>>>>> 7 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:16:49 1
>>>>>>>>>>> 9 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:23:41 1
>>>>>>>>>>> 10 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:25:11 1
>>>>>>>>>>> 11 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:27:40 1
>>>>>>>>>>> 12 0.75000 emt0.0.0.t abhinav qw 03/18/2014 22:47:21 1
>>>>>>>>>>> 13 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:14 1
>>>>>>>>>>> 14 0.75000 emt0.0.0.t abhinav qw 03/18/2014 23:14:48 1
>>>>>>>>>>> 15 0.75000 emt0.0.0.t abhinav qw 03/19/2014 16:06:01 1
>>>>>>>>>>> 16 0.25000 script.sh abhinav qw 03/19/2014 17:03:34 1
>>>>>>>>>>> 17 0.25000 script.sh abhinav qw 03/19/2014 17:04:14 1
>>>>>>>>>>> 18 0.25000 script.sh abhinav qw 03/19/2014 17:04:54 1
>>>>>>>>>>> 19 0.25000 script.sh abhinav qw 03/19/2014 17:07:08 1
>>>>>>>>>>
>>>>>>>>>> So, what does the queue look like:
>>>>>>>>>>
>>>>>>>>>> $ qconf -sq New
>>>>>>>>>>
>>>>>>>>>> -- Reuti
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>> abhinav@abhnav:~$ hostname
>>>>>>>>>>> abhnav
>>>>>>>>>>>
>>>>>>>>>>> On Wed, Mar 19, 2014 at 5:24 PM, Reuti <[email protected]>
>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>> Am 19.03.2014 um 12:37 schrieb Abhinav Mittal:
>>>>>>>>>>>>
>>>>>>>>>>>>> Not working
>>>>>>>>>>>>>
>>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss
>>>>>>>>>>>>> abhnav
>>>>>>>>>>>>> localhost
>>>>>>>>>>>>> abhinav@abhnav:~$ hostname
>>>>>>>>>>>>> abhnav
>>>>>>>>>>>>> abhinav@abhnav:~$ qsub script.sh
>>>>>>>>>>>>> Unable to run job: warning: abhinav your job is not allowed to
>>>>>>>>>>>>> run in any queue
>>>>>>>>>>>>> Your job 18 ("script.sh") has been submitted.
>>>>>>>>>>>>> Exiting.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Same for qsub -b y as well
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Wed, Mar 19, 2014 at 4:30 PM, Reuti
>>>>>>>>>>>>> <[email protected]> wrote:
>>>>>>>>>>>>>> Hi,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Am 19.03.2014 um 11:45 schrieb Abhinav Mittal:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I am trying to run a software called
>>>>>>>>>>>>>>> "Segway"(http://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html)
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Before looking into any application specific problems: is a
>>>>>>>>>>>>>> simple script echo'ing "Hello World" working? Can you submit a
>>>>>>>>>>>>>> binary with `qsub -b y hostname` too?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> -- Reuti
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> and getting an error "your job is not allowed to run in any
>>>>>>>>>>>>>>> que".
>>>>>>>>>>>>>>> submit host : localhost , abhnav
>>>>>>>>>>>>>>> hostname : abhnav
>>>>>>>>>>>>>>> Still I am getting this error
>>>>>>>>>>>>>>> Please help.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> -----------------------------------------------------------------------------------------------------------------
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> abhinav@abhnav:~$ segway --num-labels=4 train test.genomedata
>>>>>>>>>>>>>>> traindir
>>>>>>>>>>>>>>> traindir/observations/chr21.0000.float32 (9411193, 9595548)
>>>>>>>>>>>>>>> ____ PROGRAM ENDED SUCCESSFULLY WITH STATUS 0 AT Wednesday
>>>>>>>>>>>>>>> March 19
>>>>>>>>>>>>>>> 2014, 16:06:01 IST ____
>>>>>>>>>>>>>>> Traceback (most recent call last):
>>>>>>>>>>>>>>> File "/home/abhinav/arch/Linux-x86_64/bin/segway", line 9, in
>>>>>>>>>>>>>>> <module>
>>>>>>>>>>>>>>> load_entry_point('segway==1.1.0', 'console_scripts', 'segway')()
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 3592, in main
>>>>>>>>>>>>>>> return runner()
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 3429, in __call__
>>>>>>>>>>>>>>> self.run(*args, **kwargs)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 3407, in run
>>>>>>>>>>>>>>> self.run_train()
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 3038, in run_train
>>>>>>>>>>>>>>> instance_params = run_train_func(num_segs_range)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 3056, in run_train_singlethread
>>>>>>>>>>>>>>> res = [self.run_train_instance()]
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 2937, in run_train_instance
>>>>>>>>>>>>>>> self.run_train_round(instance_index, round_index, **kwargs)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 2899, in run_train_round
>>>>>>>>>>>>>>> round_index, **kwargs)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/run.py",
>>>>>>>>>>>>>>> line 2770, in queue_train_parallel
>>>>>>>>>>>>>>> res.queue(restartable_job)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py",
>>>>>>>>>>>>>>> line 174, in queue
>>>>>>>>>>>>>>> self._queue_unconditional(restartable_job)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py",
>>>>>>>>>>>>>>> line 164, in _queue_unconditional
>>>>>>>>>>>>>>> jobid = restartable_job.run()
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/segway/cluster/__init__.py",
>>>>>>>>>>>>>>> line 116, in run
>>>>>>>>>>>>>>> res = self.session.runJob(job_template)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/session.py",
>>>>>>>>>>>>>>> line 314, in runJob
>>>>>>>>>>>>>>> c(drmaa_run_job, jid, sizeof(jid), jobTemplate)
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/helpers.py",
>>>>>>>>>>>>>>> line 299, in c
>>>>>>>>>>>>>>> return f(*(args + (error_buffer, sizeof(error_buffer))))
>>>>>>>>>>>>>>> File
>>>>>>>>>>>>>>> "/home/abhinav/arch/Linux-x86_64/lib/python2.7/drmaa-0.7.6-py2.7.egg/drmaa/errors.py",
>>>>>>>>>>>>>>> line 151, in error_check
>>>>>>>>>>>>>>> raise _ERRORS[code - 1](error_string)
>>>>>>>>>>>>>>> drmaa.errors.DeniedByDrmException: code 17: warning: abhinav
>>>>>>>>>>>>>>> your job
>>>>>>>>>>>>>>> is not allowed to run in any queue
>>>>>>>>>>>>>>> Your job 15
>>>>>>>>>>>>>>> ("emt0.0.0.traindir.43308e4eaf5211e3a4741803736f5e43") has
>>>>>>>>>>>>>>> been submitted
>>>>>>>>>>>>>>> abhinav@abhnav:~$ hostname
>>>>>>>>>>>>>>> abhnav
>>>>>>>>>>>>>>> abhinav@abhnav:~$ qconf -ss
>>>>>>>>>>>>>>> abhnav
>>>>>>>>>>>>>>> localhost
>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>> users mailing list
>>>>>>>>>>>>>>> [email protected]
>>>>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users
>>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> users mailing list
>>>>>>>>>>>> [email protected]
>>>>>>>>>>>> https://gridengine.org/mailman/listinfo/users
>>>>>>>>>>
>>>>>>>>
>>>>>>
>>>
>
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