qhost : HOSTNAME ARCH NCPU LOAD MEMTOT MEMUSE SWAPTO SWAPUS ------------------------------------------------------------------------------- global - - - - - - - ubuntu-frontend lx26-amd64 16 4.13 31.4G 1.2G 0.0 0.0 ubuntu-node11 lx26-amd64 16 4.55 47.1G 397.5M 93.5G 0.0 ubuntu-node12 lx26-amd64 16 3.64 47.1G 1.0G 93.5G 0.0 ubuntu-node13 lx26-amd64 16 4.54 47.1G 399.9M 93.5G 0.0 ubuntu-node2 lx26-amd64 16 3.67 47.1G 818.5M 93.5G 0.0
El jue., 6 dic. 2018 a las 11:13, Reuti (<re...@staff.uni-marburg.de>) escribió: > > > Am 06.12.2018 um 15:07 schrieb Dimar Jaime González Soto < > dimar.gonzalez.s...@gmail.com>: > > > > qalter -w p doesn't shows anything, qstat shows 16 processes and not 60: > > > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 1 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 2 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 3 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 4 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 5 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 6 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 7 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 8 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 9 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 10 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 11 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 12 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 13 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 14 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 15 > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 16 > > 250 0.50000 OMA cbuach qw 12/06/2018 11:04:02 > 1 17-60:1 > > Aha, so they are running already on remote nodes – fine. As the setting in > the queue configuration is per host, this should work and provide more > processes per node instead of four. > > Is there a setting for the exechosts: > > qconf -se ubuntu-node2 > > limiting the slots to 4 in complex_values? Can you please also provide the > `qhost` output. > > -- Reuti > > > > > > > El jue., 6 dic. 2018 a las 10:59, Reuti (<re...@staff.uni-marburg.de>) > escribió: > > > > > Am 06.12.2018 um 09:47 schrieb Hay, William <w....@ucl.ac.uk>: > > > > > > On Wed, Dec 05, 2018 at 03:29:23PM -0300, Dimar Jaime Gonz??lez Soto > wrote: > > >> the app site is https://omabrowser.org/standalone/ I tried to make > a > > >> parallel environment but it didn't work. > > > The website indicates that an array job should work for this. > > > Has the load average spiked to the point where np_load_avg>=1.75? > > > > Yes, I noticed this too. Hence we need no parallel environement at all, > as OMA will just start several serial jobs as long as slots are available > AFAICS. > > > > What does `qstat` show for a running job. There should be a line for > each executing task while the waiting once are abbreviated in one line. > > > > -- Reuti > > > > > > > > > > I would try running qalter -w p against the job id to see what it > says. > > > > > > William > > > > > > > > > > > >> > > >>> Am 05.12.2018 um 19:10 schrieb Dimar Jaime Gonzalez Soto > > >> <dimar.gonzalez.s...@gmail.com>: > > >>> > > >>> Hi everyone I'm trying to run OMA standalone on a grid engine setup > > >> with this line: > > >>> > > >>> qsub -v NR_PROCESSES=60 -b y -j y -t 1-60 -cwd /usr/local/OMA/bin/OMA > > >>> > > >>> it works but only execute 4 processes per node, there are 4 nodes > > >> with 16 logical threads. My main.q configuration is: > > >>> > > >>> qname main.q > > >>> hostlist @allhosts > > >>> seq_no 0 > > >>> load_thresholds np_load_avg=1.75 > > >>> suspend_thresholds NONE > > >>> nsuspend 1 > > >>> suspend_interval 00:05:00 > > >>> priority 0 > > >>> min_cpu_interval 00:05:00 > > >>> processors UNDIFINED > > >>> qtype BATCH INTERACTIVE > > >>> ckpt_list NONE > > >>> pe_list make > > >>> rerun FALSE > > >>> slots 16 > > > > > > > > -- > > Atte. > > > > Dimar González Soto > > Ingeniero Civil en Informática > > Universidad Austral de Chile > > > > > > -- Atte. Dimar González Soto Ingeniero Civil en Informática Universidad Austral de Chile
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