Jorge, you'd probably retry from a fresh install.
FWIW, I built Open 5.0.8 on a Fedora 42 container without any issues, so that suggests the issue could come from your environment. Cheers, Gilles On Wed, Jul 30, 2025 at 2:23 AM <jde...@intec.unl.edu.ar> wrote: > Dear Gilles, > > Thank you very much for your reply! > > Gilles Gouaillardet <gilles.gouaillar...@gmail.com> escribió: > > > Jorge, > > > > The logs suggest you built on a Fedora 39 with a custom built gcc. > > I almost agree (that is, it is a custom built of gcc). Last night I > also noticed > that the messages suggested I had Fedora 39 but, on the other hand, > since I routinely update to the latest versions, without any > difficulties of any > kind, I am almost certain that is not the case. So now I am surprised by > the > discrepancy with what is being reported, on the same laptop, for example. > > $ cat /etc/fedora-release > Fedora release 42 (Adams) > > $ uname -r > 6.5.6-300.fc39.x86_64 > > $ cat /etc/os-release > NAME="Fedora Linux" > VERSION="42 (Workstation Edition)" > RELEASE_TYPE=stable > ID=fedora > VERSION_ID=42 > VERSION_CODENAME="" > PLATFORM_ID="platform:f42" > PRETTY_NAME="Fedora Linux 42 (Workstation Edition)" > ANSI_COLOR="0;38;2;60;110;180" > LOGO=fedora-logo-icon > CPE_NAME="cpe:/o:fedoraproject:fedora:42" > DEFAULT_HOSTNAME="fedora" > HOME_URL="https://fedoraproject.org/"; > DOCUMENTATION_URL=" > https://docs.fedoraproject.org/en-US/fedora/f42/system-administrators-guide/ > " > SUPPORT_URL="https://ask.fedoraproject.org/"; > BUG_REPORT_URL="https://bugzilla.redhat.com/"; > REDHAT_BUGZILLA_PRODUCT="Fedora" > REDHAT_BUGZILLA_PRODUCT_VERSION=42 > REDHAT_SUPPORT_PRODUCT="Fedora" > REDHAT_SUPPORT_PRODUCT_VERSION=42 > SUPPORT_END=2026-05-13 > VARIANT="Workstation Edition" > VARIANT_ID=workstation > > Perhaps it would be more advisable to reinstall Fedora 42 from scratch? > > > You might have more luck using the distro compiler, also, using the > distro > > provided hwloc and libevent libraries will make things easier. > > Ok. I will also keep this suggestion in mind. > > > > Cheers, > > > > Gilles > > Best regards. > Jorge D'Elia. > > > --- > > On Tue, Jul 29, 2025 at 9:51 AM <jde...@intec.unl.edu.ar> wrote: > > > >> Hi there, > >> > >> Today I tried to update the openmpi package by building > >> > >> > https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.8.tar.gz > >> > >> on a x86_64-pc-linux-gnu machine: > >> > >> $ cat /proc/cpuinfo > >> processor : 0 > >> vendor_id : GenuineIntel > >> cpu family : 6 > >> model : 60 > >> model name : Intel(R) Core(TM) i7-4702MQ CPU @ 2.20GHz > >> stepping : 3 > >> microcode : 0x28 > >> cpu MHz : 798.197 > >> cache size : 6144 KB > >> physical id : 0 > >> siblings : 4 > >> core id : 0 > >> cpu cores : 4 > >> apicid : 0 > >> initial apicid : 0 > >> fpu : yes > >> fpu_exception : yes > >> cpuid level : 13 > >> wp : yes > >> > >> > >> using a Fedora 42 release: > >> > >> $ uname --a > >> Linux pitonisa 6.5.6-300.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Fri Oct 6 > >> 19:57:21 UTC 2023 x86_64 GNU/Linux > >> > >> However, this time, there is the following error: > >> > >> ... > >> CC pevent.o > >> CCLD pevent > >> /usr/bin/ld: > >> > /home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/libevent-2.1.12-stable-ompi/.libs/libevent_pthreads.so: > >> undefined reference to `__pthread_cond_timedwait64' > >> collect2: error: ld returned 1 exit status > >> make[4]: *** [Makefile:711: pevent] Error 1 > >> make[4]: Leaving directory > >> > '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix/src/tools/pevent' > >> make[3]: *** [Makefile:1291: all-recursive] Error 1 > >> make[3]: Leaving directory > >> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix/src' > >> make[2]: *** [Makefile:789: all-recursive] Error 1 > >> make[2]: Leaving directory > >> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix' > >> make[1]: *** [Makefile:1412: all-recursive] Error 1 > >> make[1]: Leaving directory > >> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party' > >> make: *** [Makefile:1540: all-recursive] Error 1 > >> > >> (see the 3 attached files). > >> > >> Please, any clue to solve it? > >> > >> Thanks in advance. > >> > >> Regards. > >> Jorge D'Elia. > >> -- > >> > >> > >> To unsubscribe from this group and stop receiving emails from it, send > an > >> email to users+unsubscr...@lists.open-mpi.org. > >> > > > > To unsubscribe from this group and stop receiving emails from it, > > send an email to users+unsubscr...@lists.open-mpi.org. > > > To unsubscribe from this group and stop receiving emails from it, send an > email to users+unsubscr...@lists.open-mpi.org. > > To unsubscribe from this group and stop receiving emails from it, send an email to users+unsubscr...@lists.open-mpi.org.
