Dear Gilles,
Gilles Gouaillardet <gilles.gouaillar...@gmail.com> escribió:
Jorge,
you'd probably retry from a fresh install.
Ok. I will do that. Thank you very much for your time in responding.
FWIW, I built Open 5.0.8 on a Fedora 42 container without any issues, so
that suggests the issue could come from your environment
You are right! The problem was with my beta version of gfortran, since using
the system one, the OpenMPI compilation was completed successfully, as it
almost always does.
Cheers,
Gilles
Regards,
Jorge.
On Wed, Jul 30, 2025 at 2:23 AM <jde...@intec.unl.edu.ar> wrote:
Dear Gilles,
Thank you very much for your reply!
Gilles Gouaillardet <gilles.gouaillar...@gmail.com> escribió:
> Jorge,
>
> The logs suggest you built on a Fedora 39 with a custom built gcc.
I almost agree (that is, it is a custom built of gcc). Last night I
also noticed
that the messages suggested I had Fedora 39 but, on the other hand,
since I routinely update to the latest versions, without any
difficulties of any
kind, I am almost certain that is not the case. So now I am surprised by
the
discrepancy with what is being reported, on the same laptop, for example.
$ cat /etc/fedora-release
Fedora release 42 (Adams)
$ uname -r
6.5.6-300.fc39.x86_64
$ cat /etc/os-release
NAME="Fedora Linux"
VERSION="42 (Workstation Edition)"
RELEASE_TYPE=stable
ID=fedora
VERSION_ID=42
VERSION_CODENAME=""
PLATFORM_ID="platform:f42"
PRETTY_NAME="Fedora Linux 42 (Workstation Edition)"
ANSI_COLOR="0;38;2;60;110;180"
LOGO=fedora-logo-icon
CPE_NAME="cpe:/o:fedoraproject:fedora:42"
DEFAULT_HOSTNAME="fedora"
HOME_URL="https://fedoraproject.org/";
DOCUMENTATION_URL="
https://docs.fedoraproject.org/en-US/fedora/f42/system-administrators-guide/
"
SUPPORT_URL="https://ask.fedoraproject.org/";
BUG_REPORT_URL="https://bugzilla.redhat.com/";
REDHAT_BUGZILLA_PRODUCT="Fedora"
REDHAT_BUGZILLA_PRODUCT_VERSION=42
REDHAT_SUPPORT_PRODUCT="Fedora"
REDHAT_SUPPORT_PRODUCT_VERSION=42
SUPPORT_END=2026-05-13
VARIANT="Workstation Edition"
VARIANT_ID=workstation
Perhaps it would be more advisable to reinstall Fedora 42 from scratch?
> You might have more luck using the distro compiler, also, using the
distro
> provided hwloc and libevent libraries will make things easier.
Ok. I will also keep this suggestion in mind.
> Cheers,
>
> Gilles
Best regards.
Jorge D'Elia.
> ---
> On Tue, Jul 29, 2025 at 9:51 AM <jde...@intec.unl.edu.ar> wrote:
>
>> Hi there,
>>
>> Today I tried to update the openmpi package by building
>>
>>
https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.8.tar.gz
>>
>> on a x86_64-pc-linux-gnu machine:
>>
>> $ cat /proc/cpuinfo
>> processor : 0
>> vendor_id : GenuineIntel
>> cpu family : 6
>> model : 60
>> model name : Intel(R) Core(TM) i7-4702MQ CPU @ 2.20GHz
>> stepping : 3
>> microcode : 0x28
>> cpu MHz : 798.197
>> cache size : 6144 KB
>> physical id : 0
>> siblings : 4
>> core id : 0
>> cpu cores : 4
>> apicid : 0
>> initial apicid : 0
>> fpu : yes
>> fpu_exception : yes
>> cpuid level : 13
>> wp : yes
>>
>>
>> using a Fedora 42 release:
>>
>> $ uname --a
>> Linux pitonisa 6.5.6-300.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Fri Oct 6
>> 19:57:21 UTC 2023 x86_64 GNU/Linux
>>
>> However, this time, there is the following error:
>>
>> ...
>> CC pevent.o
>> CCLD pevent
>> /usr/bin/ld:
>>
/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/libevent-2.1.12-stable-ompi/.libs/libevent_pthreads.so:
>> undefined reference to `__pthread_cond_timedwait64'
>> collect2: error: ld returned 1 exit status
>> make[4]: *** [Makefile:711: pevent] Error 1
>> make[4]: Leaving directory
>>
'/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix/src/tools/pevent'
>> make[3]: *** [Makefile:1291: all-recursive] Error 1
>> make[3]: Leaving directory
>> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix/src'
>> make[2]: *** [Makefile:789: all-recursive] Error 1
>> make[2]: Leaving directory
>> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party/openpmix'
>> make[1]: *** [Makefile:1412: all-recursive] Error 1
>> make[1]: Leaving directory
>> '/home/bigpack/openmpi-paq/openmpi-5.0.8/BUILD/3rd-party'
>> make: *** [Makefile:1540: all-recursive] Error 1
>>
>> (see the 3 attached files).
>>
>> Please, any clue to solve it?
>>
>> Thanks in advance.
>>
>> Regards.
>> Jorge D'Elia.
>> --
>>
>>
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