Dear Barnali and Dear All Developers and Users, I am also getting the same error when running it on single machine with mpirun. Kindly anybody, help in this regards. I am trying to run example01 and errors are:::
bpp@bpp:~/espresso-5.2.1/thermo_pw/examples/example01$ ./run_example /home/bpp/espresso-5.2.1/thermo_pw/examples/example01 : starting This example shows how to use thermo_pw.x to make a self-consistent calculation of Silicon. executables directory: /home/bpp/espresso-5.2.1/bin pseudo directory: /home/bpp/espresso-5.2.1/pseudo temporary directory: /home/bpp/espresso-5.2.1/tempdir checking that needed directories and files exist... done running thermo_pw.x as: mpirun -np 4 /home/bpp/espresso-5.2.1/bin/thermo_pw.x -ni 2 cleaning /home/bpp/espresso-5.2.1/tempdir... done running the scf calculation for Si... Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 0xB736E133 #1 0xB736E7D0 #2 0xB76FC403 0xB73B4133 #1 0xB73B47D0 #2 0xB7742403 #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 #5 #3 0x804DF7B in thermo_pw at thermo_pw.f90:140 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: 0xB73A4133 #1 0xB73A47D0 #2 0xB7732403 #0 0xB7351133 #1 0xB73517D0 #2 0xB76DF403 #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 #4 #3 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 Error condition encountered during test: exit status = 139 Aborting You kind help will highly appreciated. -- Regards Dr. Bramha P Pandey Asstt. Prof. ECE Deptt. GLA University, Mathura (U.P) India-281406. On Wed, Dec 9, 2015 at 6:20 PM, Barnali Bhattacharya < [email protected]> wrote: > Dear Sir/Madam, > > I am a user of Quantum espresso. I am interested in elastic constant and > install thermo_pw.0.3.0 in the quantum espresso (QE 5.2.1) root > directory. I have followed the flowing steps- > > cd espresso-5.2.1 > ./configure --enable-openmp > cd thermo_pw > make join_qe > cd ../ > make all > > Without showing any error thermo_pw.x has been built, but when I am trying > to run example(example13) , I get the following error- > > ............................................................................................................................ > running thermo_pw.x as: mpirun -np 4 > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x > -ni 2 -nk 1 -nd 1 -nb 1 -nt 1 > > cleaning > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/tempdir... done > running the thermo mur_lc_elastic_constants calculation > to calculate the elastic constants of silicon at the > equilibrium lattice constant. The results are in si.elastic.out... > [cluster:05522] *** Process received signal *** > [cluster:05522] Signal: Segmentation fault (11) > [cluster:05522] Signal code: Address not mapped (1) > [cluster:05522] Failing at address: 0xffffffff > [cluster:05521] *** Process received signal *** > [cluster:05521] Signal: Segmentation fault (11) > [cluster:05521] Signal code: Address not mapped (1) > [cluster:05521] Failing at address: 0xffffffff > [cluster:05522] [ 0] /lib64/libpthread.so.0() [0x392240f500] > [cluster:05522] [ 1] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > [0x459fe4] > [cluster:05522] [ 2] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > [0x4aa88a] > [cluster:05522] [ 3] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > [0x44f145] > [cluster:05522] [ 4] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > [0xb742aa] > [cluster:05522] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > [0x392181ecdd] > [cluster:05522] [ 6] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > [0x44f019] > [cluster:05522] *** End of error message *** > [cluster:05521] [ 0] /lib64/libpthread.so.0() [0x392240f500] > [cluster:05521] [ 1] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > [0x459fe4] > [cluster:05521] [ 2] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > [0x4aa88a] > [cluster:05521] [ 3] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > [0x44f145] > [cluster:05521] [ 4] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > [0xb742aa] > [cluster:05521] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > [0x392181ecdd] > [cluster:05521] [ 6] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > [0x44f019] > [cluster:05521] *** End of error message *** > [cluster:05524] *** Process received signal *** > [cluster:05524] Signal: Segmentation fault (11) > [cluster:05524] Signal code: Address not mapped (1) > [cluster:05524] Failing at address: 0xffffffff > [cluster:05523] *** Process received signal *** > [cluster:05523] Signal: Segmentation fault (11) > [cluster:05523] Signal code: Address not mapped (1) > [cluster:05523] Failing at address: 0xffffffff > [cluster:05524] [ 0] /lib64/libpthread.so.0() [0x392240f500] > [cluster:05524] [ 1] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > [0x459fe4] > [cluster:05524] [ 2] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > [0x4aa88a] > [cluster:05524] [ 3] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > [0x44f145] > [cluster:05524] [ 4] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > [0xb742aa] > [cluster:05524] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > [0x392181ecdd] > [cluster:05524] [ 6] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > [0x44f019] > [cluster:05524] *** End of error message *** > [cluster:05523] [ 0] /lib64/libpthread.so.0() [0x392240f500] > [cluster:05523] [ 1] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > [0x459fe4] > [cluster:05523] [ 2] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > [0x4aa88a] > [cluster:05523] [ 3] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > [0x44f145] > [cluster:05523] [ 4] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > [0xb742aa] > [cluster:05523] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > [0x392181ecdd] > [cluster:05523] [ 6] > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > [0x44f019] > [cluster:05523] *** End of error message *** > > mpirun noticed that process rank 0 with PID 5521 on node cluster.hpc.org > exited on signal 11 (Segmentation fault). > > Error condition encountered during test: exit status = 139 > Aborting > [Utpal@cluster example13]$ > > ............................................................................................................................................ > I have checked that the libpthread.so.0 and libc.so.6 file are not in the > lib64 directory, it is in the lib directory. I have checked the Makefile > of thermo_pw/src and make.sys of espresso-5.2.1. But could not understand > where can I define this path? > Could anyone please help me to solve this problem? Any sort of help will > be thankfully acknowledged. > > Thanking you. > > Sincerely > Barnali Bhattacharya > Ph.D student, Department of physics, > Assam university > > > > > _______________________________________________ > Pw_forum mailing list > [email protected] > http://pwscf.org/mailman/listinfo/pw_forum >
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