Thanks alot Dear Andrea Sir for your prompt response. And sorry for wrong forum posting... Will see ..
-- Regards Dr. Bramha P Pandey Asstt. Prof. ECE Deptt. GLA University, Mathura (U.P) India-281406. On Thu, Dec 10, 2015 at 6:48 PM, Andrea Dal Corso <[email protected]> wrote: > These questions should be asked on the thermo_pw-forum mailing list. > There the question has been answered and the error has been corrected in > the cvs version: > > Please see commit 21109 and make the same change in your source. > > HTH, > > Andrea > > On Thu, 2015-12-10 at 17:11 +0530, Bramha Pandey wrote: > > Dear Barnali and Dear All Developers and Users, > > I am also getting the same error when running it on single machine with > > mpirun. > > Kindly anybody, help in this regards. I am trying to run example01 and > > errors are::: > > > > bpp@bpp:~/espresso-5.2.1/thermo_pw/examples/example01$ ./run_example > > > > /home/bpp/espresso-5.2.1/thermo_pw/examples/example01 : starting > > > > This example shows how to use thermo_pw.x to make a self-consistent > > calculation of Silicon. > > > > executables directory: /home/bpp/espresso-5.2.1/bin > > pseudo directory: /home/bpp/espresso-5.2.1/pseudo > > temporary directory: /home/bpp/espresso-5.2.1/tempdir > > checking that needed directories and files exist... done > > > > running thermo_pw.x as: mpirun -np 4 > > /home/bpp/espresso-5.2.1/bin/thermo_pw.x -ni 2 > > > > cleaning /home/bpp/espresso-5.2.1/tempdir... done > > running the scf calculation for Si... > > Program received signal SIGSEGV: Segmentation fault - invalid memory > > reference. > > > > Backtrace for this error: > > #0 > > Program received signal SIGSEGV: Segmentation fault - invalid memory > > reference. > > > > Backtrace for this error: > > #0 0xB736E133 > > #1 0xB736E7D0 > > #2 0xB76FC403 > > 0xB73B4133 > > #1 0xB73B47D0 > > #2 0xB7742403 > > #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > > #5 #3 0x804DF7B in thermo_pw at thermo_pw.f90:140 > > 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > > > > Program received signal SIGSEGV: Segmentation fault - invalid memory > > reference. > > > > Backtrace for this error: > > #0 > > Program received signal SIGSEGV: Segmentation fault - invalid memory > > reference. > > > > Backtrace for this error: > > 0xB73A4133 > > #1 0xB73A47D0 > > #2 0xB7732403 > > #0 0xB7351133 > > #1 0xB73517D0 > > #2 0xB76DF403 > > #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > > #4 #3 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > > 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > > Error condition encountered during test: exit status = 139 > > Aborting > > You kind help will highly appreciated. > > > > -- > > Regards > > Dr. Bramha P Pandey > > Asstt. Prof. ECE Deptt. > > GLA University, Mathura (U.P) > > India-281406. > > > > On Wed, Dec 9, 2015 at 6:20 PM, Barnali Bhattacharya < > > [email protected]> wrote: > > > > > Dear Sir/Madam, > > > > > > I am a user of Quantum espresso. I am interested in elastic constant > and > > > install thermo_pw.0.3.0 in the quantum espresso (QE 5.2.1) root > > > directory. I have followed the flowing steps- > > > > > > cd espresso-5.2.1 > > > ./configure --enable-openmp > > > cd thermo_pw > > > make join_qe > > > cd ../ > > > make all > > > > > > Without showing any error thermo_pw.x has been built, but when I am > trying > > > to run example(example13) , I get the following error- > > > > > > > ............................................................................................................................ > > > running thermo_pw.x as: mpirun -np 4 > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x > > > -ni 2 -nk 1 -nd 1 -nb 1 -nt 1 > > > > > > cleaning > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/tempdir... > done > > > running the thermo mur_lc_elastic_constants calculation > > > to calculate the elastic constants of silicon at the > > > equilibrium lattice constant. The results are in si.elastic.out... > > > [cluster:05522] *** Process received signal *** > > > [cluster:05522] Signal: Segmentation fault (11) > > > [cluster:05522] Signal code: Address not mapped (1) > > > [cluster:05522] Failing at address: 0xffffffff > > > [cluster:05521] *** Process received signal *** > > > [cluster:05521] Signal: Segmentation fault (11) > > > [cluster:05521] Signal code: Address not mapped (1) > > > [cluster:05521] Failing at address: 0xffffffff > > > [cluster:05522] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > > [cluster:05522] [ 1] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > > [0x459fe4] > > > [cluster:05522] [ 2] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > > [0x4aa88a] > > > [cluster:05522] [ 3] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > > [0x44f145] > > > [cluster:05522] [ 4] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > > [0xb742aa] > > > [cluster:05522] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > > [0x392181ecdd] > > > [cluster:05522] [ 6] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > > [0x44f019] > > > [cluster:05522] *** End of error message *** > > > [cluster:05521] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > > [cluster:05521] [ 1] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > > [0x459fe4] > > > [cluster:05521] [ 2] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > > [0x4aa88a] > > > [cluster:05521] [ 3] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > > [0x44f145] > > > [cluster:05521] [ 4] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > > [0xb742aa] > > > [cluster:05521] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > > [0x392181ecdd] > > > [cluster:05521] [ 6] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > > [0x44f019] > > > [cluster:05521] *** End of error message *** > > > [cluster:05524] *** Process received signal *** > > > [cluster:05524] Signal: Segmentation fault (11) > > > [cluster:05524] Signal code: Address not mapped (1) > > > [cluster:05524] Failing at address: 0xffffffff > > > [cluster:05523] *** Process received signal *** > > > [cluster:05523] Signal: Segmentation fault (11) > > > [cluster:05523] Signal code: Address not mapped (1) > > > [cluster:05523] Failing at address: 0xffffffff > > > [cluster:05524] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > > [cluster:05524] [ 1] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > > [0x459fe4] > > > [cluster:05524] [ 2] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > > [0x4aa88a] > > > [cluster:05524] [ 3] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > > [0x44f145] > > > [cluster:05524] [ 4] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > > [0xb742aa] > > > [cluster:05524] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > > [0x392181ecdd] > > > [cluster:05524] [ 6] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > > [0x44f019] > > > [cluster:05524] *** End of error message *** > > > [cluster:05523] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > > [cluster:05523] [ 1] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > > [0x459fe4] > > > [cluster:05523] [ 2] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > > [0x4aa88a] > > > [cluster:05523] [ 3] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > > [0x44f145] > > > [cluster:05523] [ 4] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > > [0xb742aa] > > > [cluster:05523] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > > [0x392181ecdd] > > > [cluster:05523] [ 6] > > > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > > [0x44f019] > > > [cluster:05523] *** End of error message *** > > > > > > mpirun noticed that process rank 0 with PID 5521 on node > cluster.hpc.org > > > exited on signal 11 (Segmentation fault). > > > > > > Error condition encountered during test: exit status = 139 > > > Aborting > > > [Utpal@cluster example13]$ > > > > > > > ............................................................................................................................................ > > > I have checked that the libpthread.so.0 and libc.so.6 file are not in > the > > > lib64 directory, it is in the lib directory. I have checked the > Makefile > > > of thermo_pw/src and make.sys of espresso-5.2.1. But could not > understand > > > where can I define this path? > > > Could anyone please help me to solve this problem? Any sort of help > will > > > be thankfully acknowledged. > > > > > > Thanking you. > > > > > > Sincerely > > > Barnali Bhattacharya > > > Ph.D student, Department of physics, > > > Assam university > > > > > > > > > > > > > > > _______________________________________________ > > > Pw_forum mailing list > > > [email protected] > > > http://pwscf.org/mailman/listinfo/pw_forum > > > > > _______________________________________________ > > Pw_forum mailing list > > [email protected] > > http://pwscf.org/mailman/listinfo/pw_forum > > -- > Andrea Dal Corso Tel. 0039-040-3787428 > SISSA, Via Bonomea 265 Fax. 0039-040-3787249 > I-34136 Trieste (Italy) e-mail: [email protected] > > > _______________________________________________ > Pw_forum mailing list > [email protected] > http://pwscf.org/mailman/listinfo/pw_forum >
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