These questions should be asked on the thermo_pw-forum mailing list. There the question has been answered and the error has been corrected in the cvs version:
Please see commit 21109 and make the same change in your source. HTH, Andrea On Thu, 2015-12-10 at 17:11 +0530, Bramha Pandey wrote: > Dear Barnali and Dear All Developers and Users, > I am also getting the same error when running it on single machine with > mpirun. > Kindly anybody, help in this regards. I am trying to run example01 and > errors are::: > > bpp@bpp:~/espresso-5.2.1/thermo_pw/examples/example01$ ./run_example > > /home/bpp/espresso-5.2.1/thermo_pw/examples/example01 : starting > > This example shows how to use thermo_pw.x to make a self-consistent > calculation of Silicon. > > executables directory: /home/bpp/espresso-5.2.1/bin > pseudo directory: /home/bpp/espresso-5.2.1/pseudo > temporary directory: /home/bpp/espresso-5.2.1/tempdir > checking that needed directories and files exist... done > > running thermo_pw.x as: mpirun -np 4 > /home/bpp/espresso-5.2.1/bin/thermo_pw.x -ni 2 > > cleaning /home/bpp/espresso-5.2.1/tempdir... done > running the scf calculation for Si... > Program received signal SIGSEGV: Segmentation fault - invalid memory > reference. > > Backtrace for this error: > #0 > Program received signal SIGSEGV: Segmentation fault - invalid memory > reference. > > Backtrace for this error: > #0 0xB736E133 > #1 0xB736E7D0 > #2 0xB76FC403 > 0xB73B4133 > #1 0xB73B47D0 > #2 0xB7742403 > #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > #5 #3 0x804DF7B in thermo_pw at thermo_pw.f90:140 > 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > > Program received signal SIGSEGV: Segmentation fault - invalid memory > reference. > > Backtrace for this error: > #0 > Program received signal SIGSEGV: Segmentation fault - invalid memory > reference. > > Backtrace for this error: > 0xB73A4133 > #1 0xB73A47D0 > #2 0xB7732403 > #0 0xB7351133 > #1 0xB73517D0 > #2 0xB76DF403 > #3 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > #4 #3 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > 0x8057E2F in clean_ngeo_ at initialize_thermo_work.f90:338 > #4 0x8099B08 in thermo_readin_ at thermo_readin.f90:569 > #5 0x804DF7B in thermo_pw at thermo_pw.f90:140 > Error condition encountered during test: exit status = 139 > Aborting > You kind help will highly appreciated. > > -- > Regards > Dr. Bramha P Pandey > Asstt. Prof. ECE Deptt. > GLA University, Mathura (U.P) > India-281406. > > On Wed, Dec 9, 2015 at 6:20 PM, Barnali Bhattacharya < > [email protected]> wrote: > > > Dear Sir/Madam, > > > > I am a user of Quantum espresso. I am interested in elastic constant and > > install thermo_pw.0.3.0 in the quantum espresso (QE 5.2.1) root > > directory. I have followed the flowing steps- > > > > cd espresso-5.2.1 > > ./configure --enable-openmp > > cd thermo_pw > > make join_qe > > cd ../ > > make all > > > > Without showing any error thermo_pw.x has been built, but when I am trying > > to run example(example13) , I get the following error- > > > > ............................................................................................................................ > > running thermo_pw.x as: mpirun -np 4 > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x > > -ni 2 -nk 1 -nd 1 -nb 1 -nt 1 > > > > cleaning > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/tempdir... done > > running the thermo mur_lc_elastic_constants calculation > > to calculate the elastic constants of silicon at the > > equilibrium lattice constant. The results are in si.elastic.out... > > [cluster:05522] *** Process received signal *** > > [cluster:05522] Signal: Segmentation fault (11) > > [cluster:05522] Signal code: Address not mapped (1) > > [cluster:05522] Failing at address: 0xffffffff > > [cluster:05521] *** Process received signal *** > > [cluster:05521] Signal: Segmentation fault (11) > > [cluster:05521] Signal code: Address not mapped (1) > > [cluster:05521] Failing at address: 0xffffffff > > [cluster:05522] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > [cluster:05522] [ 1] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > [0x459fe4] > > [cluster:05522] [ 2] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > [0x4aa88a] > > [cluster:05522] [ 3] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > [0x44f145] > > [cluster:05522] [ 4] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > [0xb742aa] > > [cluster:05522] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > [0x392181ecdd] > > [cluster:05522] [ 6] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > [0x44f019] > > [cluster:05522] *** End of error message *** > > [cluster:05521] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > [cluster:05521] [ 1] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > [0x459fe4] > > [cluster:05521] [ 2] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > [0x4aa88a] > > [cluster:05521] [ 3] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > [0x44f145] > > [cluster:05521] [ 4] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > [0xb742aa] > > [cluster:05521] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > [0x392181ecdd] > > [cluster:05521] [ 6] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > [0x44f019] > > [cluster:05521] *** End of error message *** > > [cluster:05524] *** Process received signal *** > > [cluster:05524] Signal: Segmentation fault (11) > > [cluster:05524] Signal code: Address not mapped (1) > > [cluster:05524] Failing at address: 0xffffffff > > [cluster:05523] *** Process received signal *** > > [cluster:05523] Signal: Segmentation fault (11) > > [cluster:05523] Signal code: Address not mapped (1) > > [cluster:05523] Failing at address: 0xffffffff > > [cluster:05524] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > [cluster:05524] [ 1] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > [0x459fe4] > > [cluster:05524] [ 2] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > [0x4aa88a] > > [cluster:05524] [ 3] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > [0x44f145] > > [cluster:05524] [ 4] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > [0xb742aa] > > [cluster:05524] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > [0x392181ecdd] > > [cluster:05524] [ 6] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > [0x44f019] > > [cluster:05524] *** End of error message *** > > [cluster:05523] [ 0] /lib64/libpthread.so.0() [0x392240f500] > > [cluster:05523] [ 1] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(clean_ngeo_+0x24) > > [0x459fe4] > > [cluster:05523] [ 2] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(thermo_readin_+0x296a) > > [0x4aa88a] > > [cluster:05523] [ 3] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(MAIN__+0x65) > > [0x44f145] > > [cluster:05523] [ 4] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x(main+0x2a) > > [0xb742aa] > > [cluster:05523] [ 5] /lib64/libc.so.6(__libc_start_main+0xfd) > > [0x392181ecdd] > > [cluster:05523] [ 6] > > /home/Utpal/Quantum_espresso/espresso-5.2.1/espresso-5.2.1/bin/thermo_pw.x() > > [0x44f019] > > [cluster:05523] *** End of error message *** > > > > mpirun noticed that process rank 0 with PID 5521 on node cluster.hpc.org > > exited on signal 11 (Segmentation fault). > > > > Error condition encountered during test: exit status = 139 > > Aborting > > [Utpal@cluster example13]$ > > > > ............................................................................................................................................ > > I have checked that the libpthread.so.0 and libc.so.6 file are not in the > > lib64 directory, it is in the lib directory. I have checked the Makefile > > of thermo_pw/src and make.sys of espresso-5.2.1. But could not understand > > where can I define this path? > > Could anyone please help me to solve this problem? Any sort of help will > > be thankfully acknowledged. > > > > Thanking you. > > > > Sincerely > > Barnali Bhattacharya > > Ph.D student, Department of physics, > > Assam university > > > > > > > > > > _______________________________________________ > > Pw_forum mailing list > > [email protected] > > http://pwscf.org/mailman/listinfo/pw_forum > > > _______________________________________________ > Pw_forum mailing list > [email protected] > http://pwscf.org/mailman/listinfo/pw_forum -- Andrea Dal Corso Tel. 0039-040-3787428 SISSA, Via Bonomea 265 Fax. 0039-040-3787249 I-34136 Trieste (Italy) e-mail: [email protected] _______________________________________________ Pw_forum mailing list [email protected] http://pwscf.org/mailman/listinfo/pw_forum
