For the directories to look for, I think $(pkgdatadir) as provided by autoconf/automake is the good one. Can someone confirm this option?
for files provided by viking tarball, only For "/etc" related I will use @sysconfigdir@. for machine-wide viking config, sounds good. This should default to /etc/viking somehow (or $prefix/etc/viking), rather than bare etc, if there is more than 'viking.conf' (which there is, it seems). I suggest "~/.viking/etc" for per-user config files parallel to the above.
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