Am 15. Februar 2012 13:39 schrieb Rakhee Pani <[email protected]>: > I am getting some error message related to fftw libraries . > > 91%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o > [ 95%] Building CXX object > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > Linking CXX shared library libvotca_tools.so > /usr/bin/ld: /usr/local/lib/libfftw3.a(mapflags.o): relocation R_X86_64_32 > against `.rodata' can not be used when making a shared object; recompile > with -fPIC > /usr/local/lib/libfftw3.a: could not read symbols: Bad value This is the good old shared vs. static linking issue. Search our mailing list for "R_X86_64_32" to find the details, but in short the solution is to reconfigure and recompile fftw3 with --enable-shared.
Christoph > > collect2: ld returned 1 exit status > make[2]: *** [src/libtools/libvotca_tools.so.3] Error 1 > make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2 > make: *** [all] Error 2 > > > Thanks > Rakhee > > > > On Wed, Feb 15, 2012 at 3:23 PM, Christoph Junghans <[email protected]> > wrote: >> >> Am 15. Februar 2012 12:47 schrieb Rakhee Pani <[email protected]>: >> > >> > Following my previous message on installation of votca in ubuntu .I >> > fullfilled all dependencies and I still get an error message which is as >> > below .Should I use the --insecure in command line . >> > >> > sudo ./build.sh --prefix ${prefix} tools csg >> > This is VOTCA build.sh, version 1.8.1 >> > Install prefix is '/usr/local/bin' >> > Using 5 jobs for make >> > Working on tools >> > Doing checkout for tools from https://tools.votca.googlecode.com/hg/ >> > (CTRL-C to stop) 5 4 3 2 1 >> > abort: tools.votca.googlecode.com certificate error: certificate is for >> > *.googlecode.com, *.u.googlecode.com, googlecode.com, *.codespot.com, >> > *.googlesource.com, googlesource.com (use --insecure to connect >> > insecurely) >> If have added a fix in the buildutil, please update. >> >> Christoph >> >> >> > >> > >> > Thanks All >> > Rakhee >> > On Sun, Dec 18, 2011 at 11:09 AM, Christoph Junghans >> > <[email protected]> >> > wrote: >> >> >> >> Am 17. Dezember 2011 17:56 schrieb rp <[email protected]>: >> >> > Below is the CMakeError.log file , as mentioned using -DWITH_FFTW=NO >> >> > will lead to reduced functionality , will this option disable certain >> >> > tools.Again if I try >> >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so' with ./build.sh , do I need to >> >> > replace /path/to with the place where fftw library files are >> >> > installed. >> >> Yes! >> >> >> >> In your last email, it said fftw was found, but some went wrong later. >> >> Please post the end of that CMakeError.log. >> >> >> >> Disabling fftw will only remove the ability to calculate correlation >> >> functions. >> >> >> >> >> >> >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rakhee/src/tools/CMakeFiles/ >> >> > CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the >> >> > /usr/local/ >> >> > lib/libfftw3.a failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o >> >> > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a >> >> > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': >> >> > mapflags.c:(.text+0x440): undefined reference to `log' >> >> > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': >> >> > trig.c:(.text+0x205): undefined reference to `sincos' >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function pthread_create exists in the pthreads >> >> > failed with the following output: >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ >> >> > cmake-2.8/Modules/CheckFunctionExists.c >> >> > Linking C executable cmTryCompileExec >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ >> >> > cmTryCompileExec.dir/link.txt --verbose=1 >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - >> >> > rdynamic -lpthreads >> >> > /usr/bin/ld: cannot find -lpthreads >> >> > collect2: ld returned 1 exit status >> >> > make[1]: *** [cmTryCompileExec] Error 1 >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > Determining if the function fftw_plan_r2r_1d exists in the /path/to/ >> >> > libfftw3.so failed with the following output: >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp >> >> > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make >> >> > CMakeFiles/ >> >> > cmTryCompileExec.dir/build >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ >> >> > CheckFunctionExists.c.o >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o >> >> > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ >> >> > local/share/cmake-2.8/Modules/CheckFunctionExists.c >> >> > make[1]: *** No rule to make target `/path/to/libfftw3.so', needed by >> >> > `cmTryCompileExec'. Stop. >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' >> >> > make: *** [cmTryCompileExec/fast] Error 2 >> >> > >> >> > >> >> > >> >> > Thank you >> >> > Rakhee >> >> > >> >> > >> >> > >> >> > On Dec 17, 5:12 pm, Christoph Junghans <[email protected]> wrote: >> >> >> Can you please post /home/rp/src/tools/CMakeFiles/CMakeError.log? >> >> >> >> >> >> Am 17. Dezember 2011 13:22 schrieb rp <[email protected]>: >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > I installed all dependencies and ,get an error as below .Can you >> >> >> > tell >> >> >> > me where am I going wrong. >> >> >> >> >> >> > checking for module 'fftw3' >> >> >> > -- found fftw3, version 3.3 >> >> >> > -- Found FFTW3: /usr/local/lib/libfftw3.a >> >> >> > -- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a >> >> >> > -- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a - not >> >> >> > found >> >> >> > CMake Error at CMakeModules/FindFFTW3.cmake:43 (message): >> >> >> > Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a, >> >> >> > take a >> >> >> > look >> >> >> > at the error message in >> >> >> > /home/rp/src/tools/CMakeFiles/CMakeError.log >> >> >> > to >> >> >> > find out what was going wrong. If you don't have pkg-config >> >> >> > installed you >> >> >> > will most likely have to set FFTW3_LIBRARY by hand (i.e. >> >> >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so') ! >> >> >> > Call Stack (most recent call first): >> >> >> > src/libtools/CMakeLists.txt:11 (find_package) >> >> >> >> >> >> > -- Configuring incomplete, errors occurred! >> >> >> >> >> >> > Thanks, I appreciate >> >> >> >> >> >> > On Dec 16, 11:24 am, Christoph Junghans <[email protected]> >> >> >> > wrote: >> >> >> >> Please read: >> >> >> >> <http://code.google.com/p/votca/wiki/Installing#From_Source> >> >> >> >> >> >> >> As described there, you need to add: >> >> >> >> -DEXTERNAL_BOOST=OFF to the commandline of build.sh, e.g. >> >> >> >> >> >> >> ./build.sh ....-DEXTERNAL_BOOST=OFF .... tools csg >> >> >> >> >> >> >> Alternatively, you could install boost and its dev package, see: >> >> >> >> <http://code.google.com/p/votca/wiki/Dependencies> >> >> >> >> >> >> >> Christoph >> >> >> >> >> >> >> Am 15. Dezember 2011 23:25 schrieb rp <[email protected]>: >> >> >> >> >> >> >> > Following my previous message I reinstalled cmake and tried the >> >> >> >> > steps >> >> >> >> > again to configure votca, this provides me with a different >> >> >> >> > error >> >> >> >> > as >> >> >> >> > below >> >> >> >> > Looking for sqrt in m - found-- Could NOT find BoostCMake Error >> >> >> >> > at >> >> >> >> > src/ >> >> >> >> > CMakeLists.txt:5 (message): Boost not found, make sure you >> >> >> >> > have >> >> >> >> > also >> >> >> >> > installed boost and it's dev package or use our internal >> >> >> >> > replacement >> >> >> >> > set -DEXTERNAL_BOOST=OFF >> >> >> >> >> >> >> > -- Configuring incomplete, errors occurred! >> >> >> >> > Can someone tell me how can I turn DEEXTERNAL_BOOST=OFF >> >> >> >> > Thanks >> >> >> >> >> >> >> > On Dec 15, 10:35 pm, rp <[email protected]> wrote: >> >> >> >> >> This is what I get after the command line >> >> >> >> >> >> >> >> + shift >> >> >> >> >> + [[ -prefix = -* ]] >> >> >> >> >> + [[ -prefix = --*=* ]] >> >> >> >> >> + [[ -prefix = -[^-]?* ]] >> >> >> >> >> + [[ -prefix = -[jpD]* ]] >> >> >> >> >> + set -- -p refix --latest tools csg >> >> >> >> >> + case $1 in >> >> >> >> >> + prefix=refix >> >> >> >> >> + shift 2 >> >> >> >> >> + [[ --latest = -* ]] >> >> >> >> >> + [[ --latest = --*=* ]] >> >> >> >> >> + [[ --latest = -[^-]?* ]] >> >> >> >> >> + case $1 in >> >> >> >> >> + rel=1.2.1 >> >> >> >> >> + shift >> >> >> >> >> + [[ tools = -* ]] >> >> >> >> >> + version_check -q >> >> >> >> >> ++ get_version ./build.sh >> >> >> >> >> ++ sed -ne >> >> >> >> >> 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*$/ >> >> >> >> >> \1/p' ./build.sh >> >> >> >> >> ++ sed -n '$p' >> >> >> >> >> + old_version=1.7.8 >> >> >> >> >> + '[' -q = -q ']' >> >> >> >> >> ++ get_webversion -q >> >> >> >> >> ++ local version >> >> >> >> >> ++ '[' -q = -q ']' >> >> >> >> >> +++ wget -qO-http://votca.googlecode.com/hg/build.sh >> >> >> >> >> +++ get_version >> >> >> >> >> +++ sed -ne >> >> >> >> >> 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .* >> >> >> >> >> $/\1/p' >> >> >> >> >> +++ sed -n '$p' >> >> >> >> >> ++ version=1.7.8 >> >> >> >> >> ++ echo 1.7.8 >> >> >> >> >> + new_version=1.7.8 >> >> >> >> >> + '[' -q = -q ']' >> >> >> >> >> + '[' -q = -q ']' >> >> >> >> >> + expr 1.7.8 '<' 1.7.8 >> >> >> >> >> + return 1 >> >> >> >> >> + [[ -z tools ]] >> >> >> >> >> + [[ -z refix ]] >> >> >> >> >> + [[ refix = *WHERE/TO/INSTALL/VOTCA* ]] >> >> >> >> >> + [[ refix = /* ]] >> >> >> >> >> + die 'prefix has to be a global path (should start with a >> >> >> >> >> '\''/'\'')' >> >> >> >> >> + [[ -n prefix has to be a global path (should start with a >> >> >> >> >> '/') >> >> >> >> >> ]] >> >> >> >> >> + cecho RED 'prefix has to be a global path (should start with >> >> >> >> >> a >> >> >> >> >> '\''/'\'')' >> >> >> >> >> + local opts color 'colors=BLUE CYAN CYANN GREEN RED PURP' >> >> >> >> >> + [[ RED = -?* ]] >> >> >> >> >> + [[ -z prefix has to be a global path (should start with a >> >> >> >> >> '/') >> >> >> >> >> ]] >> >> >> >> >> + is_in RED 'BLUE CYAN CYANN GREEN RED PURP' >> >> >> >> >> + [[ -z RED ]] >> >> >> >> >> + [[ -z BLUE CYAN CYANN GREEN RED PURP ]] >> >> >> >> >> + [[ BLUE CYAN CYANN GREEN RED PURP = *\ \R\E\D\ * ]] >> >> >> >> >> + color='' >> >> >> >> >> + shift >> >> >> >> >> + echo -n '' >> >> >> >> >> + echo -ne 'prefix has to be a global path (should start with >> >> >> >> >> a >> >> >> >> >> '\''/'\'')' >> >> >> >> >> prefix has to be a global path (should start with a '/')+ echo >> >> >> >> >> '' >> >> >> >> >> >> >> >> + exit 1 >> >> >> >> >> >> >> >> Thanks for your time. I appreciate >> >> >> >> >> >> >> >> On Dec 15, 10:00 pm, Christoph Junghans <[email protected]> >> >> >> >> >> wrote: >> >> >> >> >> >> >> >> > Just run: >> >> >> >> >> > $ ./build.sh --debug -prefix ${prefix} --latest tools csg >> >> >> >> >> >> >> >> > Am 15. Dezember 2011 19:46 schrieb rp >> >> >> >> >> > <[email protected]>: >> >> >> >> >> >> >> >> > > This is cmake 2.8.6 and I am installing votca in >> >> >> >> >> > > Ubuntu11.10. >> >> >> >> >> > > After >> >> >> >> >> > > installing cmake there is no error . >> >> >> >> >> >> >> >> > > Where should I add the debug option , please explain >> >> >> >> >> >> >> >> > > I am installing votca-csg-1.2.1 . I want to make this >> >> >> >> >> > > clarification , >> >> >> >> >> > > I was using REDhat linux previously , now I am trying to >> >> >> >> >> > > do >> >> >> >> >> > > this in >> >> >> >> >> > > Ubuntu .I read the Votca installation page and this says >> >> >> >> >> > > Ubuntu is >> >> >> >> >> > > still in development . I am sorry if my question is not >> >> >> >> >> > > clear. >> >> >> >> >> > > I appreciate your help >> >> >> >> >> > > Thanks >> >> >> >> >> > > On Dec 15, 7:50 pm, Christoph Junghans >> >> >> >> >> > > <[email protected]> >> >> >> >> >> > > wrote: >> >> >> >> >> > >> Hi rp, >> >> >> >> >> >> >> >> > >> which version of cmake is it? >> >> >> >> >> > >> $cmake --version >> >> >> >> >> >> >> >> > >> Please add the '--debug' option and attach the output. >> >> >> >> >> >> >> >> > >> Cheers, >> >> >> >> >> >> >> >> > >> Christoph >> >> >> >> >> >> >> >> > >> Am 15. Dezember 2011 11:42 schrieb rp >> >> >> >> >> > >> <[email protected]>: >> >> >> >> >> >> >> >> > >> > Dear Users,I get the following error while installing >> >> >> >> >> > >> > "cmake not >> >> >> >> >> > >> > found" , below are some lines. Then I installed cmake >> >> >> >> >> > >> > and >> >> >> >> >> > >> > tried again >> >> >> >> >> > >> > so this send me the error as prefix shoudl start with / >> >> >> >> >> > >> > as >> >> >> >> >> > >> > this is >> >> >> >> >> > >> > global path . I used as ./build.sh -prefix ${prefix} >> >> >> >> >> > >> > --latest tools >> >> >> >> >> > >> > csg >> >> >> >> >> >> >> >> > >> > Using 9 jobs for makeWorking on toolsDownload tarball >> >> >> >> >> > >> > votca- >> >> >> >> >> > >> > tools-1.2.1.tar.gz >> >> >> >> >> > >> > >> >> >> >> >> > >> > fromhttp://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15 >> >> >> >> >> > >> > 13:26:17-- http://votca.googlecode.com/files/votca- >> >> >> >> >> > >> > tools-1.2.1.tar.gzResolving votca.googlecode.com... >> >> >> >> >> > >> > 74.125.65.82Connecting to >> >> >> >> >> > >> > votca.googlecode.com|74.125.65.82|:80... >> >> >> >> >> > >> > connected.HTTP request sent, awaiting response... 200 >> >> >> >> >> > >> > OKLength: 961500 >> >> >> >> >> > >> > (939K) [application/x-gzip]Saving to: >> >> >> >> >> > >> > `votca-tools-1.2.1.tar.gz' >> >> >> >> >> > >> > 100%[======================================>] 961,500 >> >> >> >> >> > >> > 2.16M/s in >> >> >> >> >> > >> > 0.4s >> >> >> >> >> > >> > 2011-12-15 13:26:18 (2.16 MB/s) - >> >> >> >> >> > >> > `votca-tools-1.2.1.tar.gz' saved >> >> >> >> >> > >> > [961500/961500] >> >> >> >> >> > >> > cmake not found >> >> >> >> >> >> >> >> > >> > Thanks for any suggestions >> >> >> >> >> > >> > On Nov 17, 4:17 pm, Marc Segovia >> >> >> >> >> > >> > <[email protected]> >> >> >> >> >> > >> > wrote: >> >> >> >> >> > >> >> Hi >> >> >> >> >> >> >> >> > >> >> Provided you have dependecies fine, follow the steps >> >> >> >> >> >> >> >> > >> >> prefix=WHERE/TO/INSTALL/VOTCA >> >> >> >> >> > >> >> mkdir -p ${prefix}/src >> >> >> >> >> > >> >> cd ${prefix}/src >> >> >> >> >> > >> >> wgethttp://votca.googlecode.com/hg/build.sh >> >> >> >> >> > >> >> chmod +x build.sh >> >> >> >> >> > >> >> ./build.sh --prefix ${prefix} tools csg >> >> >> >> >> >> >> >> > >> >> maybe you can add gromacs on last line, like this >> >> >> >> >> >> >> >> > >> >> ./build.sh --prefix ${prefix} gromacs tools csg >> >> >> >> >> >> >> >> > >> >> regards >> >> >> >> >> > >> >> Marc >> >> >> >> >> > >> >> Universidad de la Republica Uruguay >> >> >> >> >> >> >> >> > >> >> On Thu, Nov 17, 2011 at 7:01 PM, rp >> >> >> >> >> > >> >> <[email protected]> wrote: >> >> >> >> >> > >> >> > Yes I have seen this installation page . I >> >> >> >> >> > >> >> > downloaded >> >> >> >> >> > >> >> > Votca and would >> >> >> >> >> > >> >> > like to know how should I go about installing thisin >> >> >> >> >> > >> >> > a >> >> >> >> >> > >> >> > linux box or in >> >> >> >> >> > >> >> > linux cluster. >> >> >> >> >> >> >> >> > >> >> > Thanks >> >> >> >> >> >> >> >> > >> >> > On Nov 17, 3:38 pm, Konstantin Koschke >> >> >> >> >> > >> >> > <[email protected]> >> >> >> >> >> > >> >> > wrote: >> >> >> >> >> > >> >> >> On Thu, Nov 17, 2011 at 8:22 PM, rp >> >> >> >> >> > >> >> >> <[email protected]> wrote: >> >> >> >> >> > >> >> >> > Can you send to instructions to install votca in >> >> >> >> >> > >> >> >> > linux. >> >> >> >> >> >> >> >> > >> >> >> > Thanks for help >> >> >> >> >> >> >> >> > >> >> >> > -- >> >> >> >> >> > >> >> >> > You received this message because you are >> >> >> >> >> > >> >> >> > subscribed >> >> >> >> >> > >> >> >> > to the Google Groups "votca" group. >> >> >> >> >> > >> >> >> > To post to this group, send email to >> >> >> >> >> > >> >> >> > [email protected]. >> >> >> >> >> > >> >> >> > To unsubscribe from this group, send email to >> >> >> >> >> > >> >> >> > [email protected]. >> >> >> >> >> > >> >> >> > For more options, visit this group >> >> >> >> >> > >> >> >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> >> >> >> >> > >> >> >> Dear rp, >> >> >> >> >> >> >> >> > >> >> >> please be a bit more precise with your problem. >> >> >> >> >> >> >> >> > >> >> >> Did you try >> >> >> >> >> > >> >> >> >> >> >> >> >> > >> >> >> followinghttp://code.google.com/p/votca/wiki/Installing? >> >> >> >> >> >> >> >> > >> >> >> cheers, >> >> >> >> >> > >> >> >> konstantin >> >> >> >> >> >> >> >> > >> >> > -- >> >> >> >> >> > >> >> > You received this message because you are subscribed >> >> >> >> >> > >> >> > to >> >> >> >> >> > >> >> > the Google Groups "votca" group. >> >> >> >> >> > >> >> > To post to this group, send email to >> >> >> >> >> > >> >> > [email protected]. >> >> >> >> >> > >> >> > To unsubscribe from this group, send email to >> >> >> >> >> > >> >> > [email protected]. >> >> >> >> >> > >> >> > For more options, visit this group >> >> >> >> >> > >> >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> >> >> >> >> > >> > -- >> >> >> >> >> > >> > You received this message because you are subscribed to >> >> >> >> >> > >> > the Google Groups "votca" group. >> >> >> >> >> > >> > To post to this group, send email to >> >> >> >> >> > >> > [email protected]. >> >> >> >> >> > >> > To unsubscribe from this group, send email to >> >> >> >> >> > >> > [email protected]. >> >> >> >> >> > >> > For more options, visit this group >> >> >> >> >> > >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> >> >> >> >> > >> -- >> >> >> >> >> > >> Christoph Junghans >> >> >> >> >> > >> Web:http://www.compphys.de >> >> >> >> >> >> >> >> > > -- >> >> >> >> >> > > You received this message because you are subscribed to >> >> >> >> >> > > the >> >> >> >> >> > > Google Groups "votca" group. >> >> >> >> >> > > To post to this group, send email to >> >> >> >> >> > > [email protected]. >> >> >> >> >> > > To unsubscribe from this group, send email to >> >> >> >> >> > > [email protected]. >> >> >> >> >> > > For more options, visit this group >> >> >> >> >> > > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> >> >> >> >> > -- >> >> >> >> >> > Christoph Junghans >> >> >> >> >> > Web:http://www.compphys.de >> >> >> >> >> >> >> > -- >> >> >> >> > You received this message because you are subscribed to the >> >> >> >> > Google >> >> >> >> > Groups "votca" group. >> >> >> >> > To post... >> >> >> >> >> >> read more » >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "votca" group. >> >> > To post to this group, send email to [email protected]. >> >> > To unsubscribe from this group, send email to >> >> > [email protected]. >> >> > For more options, visit this group at >> >> > http://groups.google.com/group/votca?hl=en. >> >> > >> >> >> >> >> >> >> >> -- >> >> Christoph Junghans >> >> Web: http://www.compphys.de >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> >> Groups >> >> "votca" group. >> >> To post to this group, send email to [email protected]. >> >> To unsubscribe from this group, send email to >> >> [email protected]. >> >> For more options, visit this group at >> >> http://groups.google.com/group/votca?hl=en. >> >> >> > >> > >> > >> > -- >> > Rakhee >> > >> > >> > >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to >> > [email protected]. >> > For more options, visit this group at >> > http://groups.google.com/group/votca?hl=en. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]. >> For more options, visit this group at >> http://groups.google.com/group/votca?hl=en. >> > > > > -- > Rakhee > > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
