Thanks for the suggestions. I recompiled and finally ran
./build.sh -DWITH_SQLITE3=OFF --prefix ${prefix} tools csgThis completed with statement "done with csg" Do I need to install the tools separately. Rakhee On Feb 15, 5:53 pm, Christoph Junghans <[email protected]> wrote: > Am 15. Februar 2012 13:39 schrieb Rakhee Pani <[email protected]>:> I am > getting some error message related to fftw libraries . > > > 91%] Building CXX object > > src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o > > [ 95%] Building CXX object > > src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > > Linking CXX shared library libvotca_tools.so > > /usr/bin/ld: /usr/local/lib/libfftw3.a(mapflags.o): relocation R_X86_64_32 > > against `.rodata' can not be used when making a shared object; recompile > > with -fPIC > > /usr/local/lib/libfftw3.a: could not read symbols: Bad value > > This is the good old shared vs. static linking issue. > Search our mailing list for "R_X86_64_32" to find the details, but in > short the solution is to reconfigure and recompile fftw3 with > --enable-shared. > > Christoph > > > > > > > collect2: ld returned 1 exit status > > make[2]: *** [src/libtools/libvotca_tools.so.3] Error 1 > > make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2 > > make: *** [all] Error 2 > > > Thanks > > Rakhee > > > On Wed, Feb 15, 2012 at 3:23 PM, Christoph Junghans <[email protected]> > > wrote: > > >> Am 15. Februar 2012 12:47 schrieb Rakhee Pani <[email protected]>: > > >> > Following my previous message on installation of votca in ubuntu .I > >> > fullfilled all dependencies and I still get an error message which is as > >> > below .Should I use the --insecure in command line . > > >> > sudo ./build.sh --prefix ${prefix} tools csg > >> > This is VOTCA build.sh, version 1.8.1 > >> > Install prefix is '/usr/local/bin' > >> > Using 5 jobs for make > >> > Working on tools > >> > Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/ > >> > (CTRL-C to stop) 5 4 3 2 1 > >> > abort: tools.votca.googlecode.com certificate error: certificate is for > >> > *.googlecode.com, *.u.googlecode.com, googlecode.com, *.codespot.com, > >> > *.googlesource.com, googlesource.com (use --insecure to connect > >> > insecurely) > >> If have added a fix in the buildutil, please update. > > >> Christoph > > >> > Thanks All > >> > Rakhee > >> > On Sun, Dec 18, 2011 at 11:09 AM, Christoph Junghans > >> > <[email protected]> > >> > wrote: > > >> >> Am 17. Dezember 2011 17:56 schrieb rp <[email protected]>: > >> >> > Below is the CMakeError.log file , as mentioned using -DWITH_FFTW=NO > >> >> > will lead to reduced functionality , will this option disable certain > >> >> > tools.Again if I try > >> >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so' with ./build.sh , do I need to > >> >> > replace /path/to with the place where fftw library files are > >> >> > installed. > >> >> Yes! > > >> >> In your last email, it said fftw was found, but some went wrong later. > >> >> Please post the end of that CMakeError.log. > > >> >> Disabling fftw will only remove the ability to calculate correlation > >> >> functions. > > >> >> > Determining if the function pthread_create exists in the pthreads > >> >> > failed with the following output: > >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/build > >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> > CheckFunctionExists.c.o > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> > cmake-2.8/Modules/CheckFunctionExists.c > >> >> > Linking C executable cmTryCompileExec > >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > >> >> > rdynamic -lpthreads > >> >> > /usr/bin/ld: cannot find -lpthreads > >> >> > collect2: ld returned 1 exit status > >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > >> >> > CMakeTmp' > >> >> > make[1]: *** [cmTryCompileExec] Error 1 > >> >> > make: *** [cmTryCompileExec/fast] Error 2 > > >> >> > Determining if the function pthread_create exists in the pthreads > >> >> > failed with the following output: > >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/build > >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> > CheckFunctionExists.c.o > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> > cmake-2.8/Modules/CheckFunctionExists.c > >> >> > Linking C executable cmTryCompileExec > >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > >> >> > rdynamic -lpthreads > >> >> > /usr/bin/ld: cannot find -lpthreads > >> >> > collect2: ld returned 1 exit status > >> >> > make[1]: *** [cmTryCompileExec] Error 1 > >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > make: *** [cmTryCompileExec/fast] Error 2 > > >> >> > Determining if the function pthread_create exists in the pthreads > >> >> > failed with the following output: > >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/build > >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> > CheckFunctionExists.c.o > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> > cmake-2.8/Modules/CheckFunctionExists.c > >> >> > Linking C executable cmTryCompileExec > >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > >> >> > rdynamic -lpthreads > >> >> > /usr/bin/ld: cannot find -lpthreads > >> >> > collect2: ld returned 1 exit status > >> >> > make[1]: *** [cmTryCompileExec] Error 1 > >> >> > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > make: *** [cmTryCompileExec/fast] Error 2 > > >> >> > Determining if the function pthread_create exists in the pthreads > >> >> > failed with the following output: > >> >> > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/build > >> >> > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> > CheckFunctionExists.c.o > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> > cmake-2.8/Modules/CheckFunctionExists.c > >> >> > Linking C executable cmTryCompileExec > >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > >> >> > rdynamic -lpthreads > >> >> > /usr/bin/ld: cannot find -lpthreads > >> >> > collect2: ld returned 1 exit status > >> >> > make[1]: *** [cmTryCompileExec] Error 1 > >> >> > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > >> >> > CMakeTmp' > >> >> > make: *** [cmTryCompileExec/fast] Error 2 > > >> >> > Determining if the function pthread_create exists in the pthreads > >> >> > failed with the following output: > >> >> > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > >> >> > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > >> >> > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/build > >> >> > make[1]: Entering directory `/home/rakhee/src/tools/CMakeFiles/ > >> >> > CMakeTmp' > >> >> > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > >> >> > CMakeFiles/CMakeTmp/CMakeFiles 1 > >> >> > Building C object CMakeFiles/cmTryCompileExec.dir/ > >> >> > CheckFunctionExists.c.o > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o > >> >> > CMakeFiles/ > >> >> > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > >> >> > cmake-2.8/Modules/CheckFunctionExists.c > >> >> > Linking C executable cmTryCompileExec > >> >> > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > >> >> > cmTryCompileExec.dir/link.txt --verbose=1 > >> >> > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create > >> >> > CMakeFiles/- Hide quoted text - 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