Yes, it shows that there is a shared version of boost. I installed the libraries using --enable-shared option, so I don't know why there is a conflict between static and shared.
On Sun, Aug 31, 2014 at 11:25 PM, Christoph Junghans <[email protected]> wrote: > 2014-08-31 12:54 GMT-06:00 Animesh Agarwal <[email protected]>: >> Please find attached the CMakeError.log file. > The error in there is the same as below. > /usr/bin/ld: attempted static link of dynamic object > `/gfs1/work/becagarw/fftw/lib/libfftw3.so' > >> >> >> For the second part, here are the lines above the error: >> =============================================================================================================== >> [ 0%] Built target hgversion >> make -f src/libtools/CMakeFiles/votca_tools.dir/build.make >> src/libtools/CMakeFiles/votca_tools.dir/depend >> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >> cd /gfs1/work/becagarw/VOTCA/src/tools && >> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_depends "Unix >> Makefiles" /gfs1/work/becagarw/VOTCA/src/tools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >> /gfs1/work/becagarw/VOTCA/src/tools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake >> --color= >> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >> make -f src/libtools/CMakeFiles/votca_tools.dir/build.make >> src/libtools/CMakeFiles/votca_tools.dir/build >> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >> make[2]: Nothing to be done for >> `src/libtools/CMakeFiles/votca_tools.dir/build'. >> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_progress_report >> /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles 2 3 4 5 6 7 8 9 10 11 >> 12 13 14 15 16 17 18 19 20 21 22 23 >> [ 95%] Built target votca_tools >> make -f src/libtools/CMakeFiles/linktest.dir/build.make >> src/libtools/CMakeFiles/linktest.dir/depend >> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >> cd /gfs1/work/becagarw/VOTCA/src/tools && >> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_depends "Unix >> Makefiles" /gfs1/work/becagarw/VOTCA/src/tools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >> /gfs1/work/becagarw/VOTCA/src/tools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools/CMakeFiles/linktest.dir/DependInfo.cmake >> --color= >> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >> make -f src/libtools/CMakeFiles/linktest.dir/build.make >> src/libtools/CMakeFiles/linktest.dir/build >> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >> Linking CXX executable linktest >> cd /gfs1/work/becagarw/VOTCA/src/tools/src/libtools && >> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_link_script >> CMakeFiles/linktest.dir/link.txt --verbose=1 >> /opt/cray/craype/2.01/bin/CC -O3 -DNDEBUG >> CMakeFiles/linktest.dir/linktest.cc.o -o linktest -rdynamic >> libvotca_tools.so.2 -lboost_program_options >> /gfs1/work/becagarw/expat/lib/libexpat.so -lpthread -lm >> -Wl,-rpath,/gfs1/work/becagarw/VOTCA/src/tools/src/libtools:/gfs1/work/becagarw/expat/lib >> /usr/bin/ld: attempted static link of dynamic object `libvotca_tools.so.2' > It seems one of your libraries is static (.a file) and mixing of > static and shared (.so) is not supported. > As expat is explicitly given > (gfs1/work/becagarw/expat/lib/libexpat.so) the problem must be your > boost installation. > Have a look if there is a shared version of boost: > $ ls /sw/tools/boost/1.55.0-gcc482/mpp1/lib/*.so > I am not 100% sure about the path, but BOOST_ROOT should be > /sw/tools/boost/1.55.0-gcc482/mpp1 I guess. > > Christoph >> ================================================================================================================== >> >> Regards >> Animesh >> >> On Sun, Aug 31, 2014 at 8:36 PM, Christoph Junghans <[email protected]> >> wrote: >>> 2014-08-31 11:52 GMT-06:00 Animesh Agarwal <[email protected]>: >>>> Hi Christoph: >>>> >>>> I have been trying to install VOTCA on the HLRN >>>> cluster, but I am getting some errors. I have installed various >>>> libraries needed for the installation. Here is the command: >>>> >>>> ========================================================================== >>>> ./build.sh -DWITH_SQLITE3=NO >>>> -DGSL_INCLUDE_DIR=/gfs1/work/becagarw/gsl/include >>>> -DGSL_LIBRARY=/gfs1/work/becagarw/gsl/lib/libgsl.so >>>> -DGSLCBLAS_LIBRARY=/gfs1/work/becagarw/gsl/lib/libgslcblas.so >>>> -DBOOST_ROOT=/sw/tools/boost/1.55.0-gcc482/mpp1/include >>>> -DEXPAT_INCLUDE_DIR=/gfs1/work/becagarw/expat/include >>>> -DEXPAT_LIBRARY=/gfs1/work/becagarw/expat/lib/libexpat.so >>>> -DFFTW3_INCLUDE_DIR=/gfs1/work/becagarw/fftw/include >>>> -DFFTW3_LIBRARY=/gfs1/work/becagarw/fftw/lib/libfftw3.so --prefix >>>> ${prefix} --latest tools csg >>>> =========================================================================== >>>> >>>> but I get the following error: >>>> >>>> =========================================================================== >>>> Could not find fftw_plan_r2r_1d in >>>> /gfs1/work/becagarw/fftw/lib/libfftw3.so, take a look at the error >>>> message >>>> in /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles/CMakeError.log to find >>>> out what was going wrong. If you are using a static lib (.a) make sure >>>> you >>>> have specified all dependencies of fftw3 in FFTW3_LIBRARY by hand (i.e. >>>> -DFFTW3_LIBRARY='/path/to/libfftw3.so;/path/to/libm.so') ! >>>> Call Stack (most recent call first): >>>> src/libtools/CMakeLists.txt:11 (find_package) >>> To find this error, could you attach your CMakeError.log (from >>> /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles) >>> If file is huge, just attach the last ~250 lines. >>> >>>> ============================================================================= >>>> >>>> If I switch off the FFTW and GSL libraries, I get the following error: >>>> >>>> ============================================================================ >>>> Linking CXX executable linktest >>>> /usr/bin/ld: attempted static link of dynamic object `libvotca_tools.so.2' >>>> collect2: error: ld returned 1 exit status >>>> make[2]: *** [src/libtools/linktest] Error 1 >>>> make[1]: *** [src/libtools/CMakeFiles/linktest.dir/all] Error 2 >>>> make: *** [all] Error 2 >>> No good idea, could you do >>> $ cd tools >>> $ make VERBOSE=1 >>> and post the last 10 lines above the error. >>> >>> Christoph >>>> ========================================================================== >>>> >>>> Please let me know how can I fix these errors. >>>> >>>> Regards >>>> Animesh >>>> >>>> -- >>>> You received this message because you are subscribed to the Google Groups >>>> "votca" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an >>>> email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at http://groups.google.com/group/votca. >>>> For more options, visit https://groups.google.com/d/optout. >>> >>> >>> >>> -- >>> Christoph Junghans >>> Web: http://www.compphys.de >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at http://groups.google.com/group/votca. >>> For more options, visit https://groups.google.com/d/optout. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
