> The error in there is the same as below. Please find attached the error log file, when FFTW library is used.
On Mon, Sep 1, 2014 at 12:03 AM, Animesh Agarwal <[email protected]> wrote: > Yes, it shows that there is a shared version of boost. I installed the > libraries using --enable-shared option, so I don't know why there is a > conflict between static and shared. > > On Sun, Aug 31, 2014 at 11:25 PM, Christoph Junghans <[email protected]> > wrote: >> 2014-08-31 12:54 GMT-06:00 Animesh Agarwal <[email protected]>: >>> Please find attached the CMakeError.log file. >> The error in there is the same as below. >> /usr/bin/ld: attempted static link of dynamic object >> `/gfs1/work/becagarw/fftw/lib/libfftw3.so' >> >>> >>> >>> For the second part, here are the lines above the error: >>> =============================================================================================================== >>> [ 0%] Built target hgversion >>> make -f src/libtools/CMakeFiles/votca_tools.dir/build.make >>> src/libtools/CMakeFiles/votca_tools.dir/depend >>> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> cd /gfs1/work/becagarw/VOTCA/src/tools && >>> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_depends "Unix >>> Makefiles" /gfs1/work/becagarw/VOTCA/src/tools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >>> /gfs1/work/becagarw/VOTCA/src/tools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake >>> --color= >>> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> make -f src/libtools/CMakeFiles/votca_tools.dir/build.make >>> src/libtools/CMakeFiles/votca_tools.dir/build >>> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> make[2]: Nothing to be done for >>> `src/libtools/CMakeFiles/votca_tools.dir/build'. >>> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_progress_report >>> /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles 2 3 4 5 6 7 8 9 10 11 >>> 12 13 14 15 16 17 18 19 20 21 22 23 >>> [ 95%] Built target votca_tools >>> make -f src/libtools/CMakeFiles/linktest.dir/build.make >>> src/libtools/CMakeFiles/linktest.dir/depend >>> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> cd /gfs1/work/becagarw/VOTCA/src/tools && >>> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_depends "Unix >>> Makefiles" /gfs1/work/becagarw/VOTCA/src/tools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >>> /gfs1/work/becagarw/VOTCA/src/tools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools >>> /gfs1/work/becagarw/VOTCA/src/tools/src/libtools/CMakeFiles/linktest.dir/DependInfo.cmake >>> --color= >>> make[2]: Leaving directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> make -f src/libtools/CMakeFiles/linktest.dir/build.make >>> src/libtools/CMakeFiles/linktest.dir/build >>> make[2]: Entering directory `/gfs1/work/becagarw/VOTCA/src/tools' >>> Linking CXX executable linktest >>> cd /gfs1/work/becagarw/VOTCA/src/tools/src/libtools && >>> /sw/tools/cmake/2.8.11/generic/GNU/bin/cmake -E cmake_link_script >>> CMakeFiles/linktest.dir/link.txt --verbose=1 >>> /opt/cray/craype/2.01/bin/CC -O3 -DNDEBUG >>> CMakeFiles/linktest.dir/linktest.cc.o -o linktest -rdynamic >>> libvotca_tools.so.2 -lboost_program_options >>> /gfs1/work/becagarw/expat/lib/libexpat.so -lpthread -lm >>> -Wl,-rpath,/gfs1/work/becagarw/VOTCA/src/tools/src/libtools:/gfs1/work/becagarw/expat/lib >>> /usr/bin/ld: attempted static link of dynamic object `libvotca_tools.so.2' >> It seems one of your libraries is static (.a file) and mixing of >> static and shared (.so) is not supported. >> As expat is explicitly given >> (gfs1/work/becagarw/expat/lib/libexpat.so) the problem must be your >> boost installation. >> Have a look if there is a shared version of boost: >> $ ls /sw/tools/boost/1.55.0-gcc482/mpp1/lib/*.so >> I am not 100% sure about the path, but BOOST_ROOT should be >> /sw/tools/boost/1.55.0-gcc482/mpp1 I guess. >> >> Christoph >>> ================================================================================================================== >>> >>> Regards >>> Animesh >>> >>> On Sun, Aug 31, 2014 at 8:36 PM, Christoph Junghans <[email protected]> >>> wrote: >>>> 2014-08-31 11:52 GMT-06:00 Animesh Agarwal <[email protected]>: >>>>> Hi Christoph: >>>>> >>>>> I have been trying to install VOTCA on the HLRN >>>>> cluster, but I am getting some errors. I have installed various >>>>> libraries needed for the installation. Here is the command: >>>>> >>>>> ========================================================================== >>>>> ./build.sh -DWITH_SQLITE3=NO >>>>> -DGSL_INCLUDE_DIR=/gfs1/work/becagarw/gsl/include >>>>> -DGSL_LIBRARY=/gfs1/work/becagarw/gsl/lib/libgsl.so >>>>> -DGSLCBLAS_LIBRARY=/gfs1/work/becagarw/gsl/lib/libgslcblas.so >>>>> -DBOOST_ROOT=/sw/tools/boost/1.55.0-gcc482/mpp1/include >>>>> -DEXPAT_INCLUDE_DIR=/gfs1/work/becagarw/expat/include >>>>> -DEXPAT_LIBRARY=/gfs1/work/becagarw/expat/lib/libexpat.so >>>>> -DFFTW3_INCLUDE_DIR=/gfs1/work/becagarw/fftw/include >>>>> -DFFTW3_LIBRARY=/gfs1/work/becagarw/fftw/lib/libfftw3.so --prefix >>>>> ${prefix} --latest tools csg >>>>> =========================================================================== >>>>> >>>>> but I get the following error: >>>>> >>>>> =========================================================================== >>>>> Could not find fftw_plan_r2r_1d in >>>>> /gfs1/work/becagarw/fftw/lib/libfftw3.so, take a look at the error >>>>> message >>>>> in /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles/CMakeError.log to find >>>>> out what was going wrong. If you are using a static lib (.a) make sure >>>>> you >>>>> have specified all dependencies of fftw3 in FFTW3_LIBRARY by hand (i.e. >>>>> -DFFTW3_LIBRARY='/path/to/libfftw3.so;/path/to/libm.so') ! >>>>> Call Stack (most recent call first): >>>>> src/libtools/CMakeLists.txt:11 (find_package) >>>> To find this error, could you attach your CMakeError.log (from >>>> /gfs1/work/becagarw/VOTCA/src/tools/CMakeFiles) >>>> If file is huge, just attach the last ~250 lines. >>>> >>>>> ============================================================================= >>>>> >>>>> If I switch off the FFTW and GSL libraries, I get the following error: >>>>> >>>>> ============================================================================ >>>>> Linking CXX executable linktest >>>>> /usr/bin/ld: attempted static link of dynamic object `libvotca_tools.so.2' >>>>> collect2: error: ld returned 1 exit status >>>>> make[2]: *** [src/libtools/linktest] Error 1 >>>>> make[1]: *** [src/libtools/CMakeFiles/linktest.dir/all] Error 2 >>>>> make: *** [all] Error 2 >>>> No good idea, could you do >>>> $ cd tools >>>> $ make VERBOSE=1 >>>> and post the last 10 lines above the error. >>>> >>>> Christoph >>>>> ========================================================================== >>>>> >>>>> Please let me know how can I fix these errors. >>>>> >>>>> Regards >>>>> Animesh >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google Groups >>>>> "votca" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send an >>>>> email to [email protected]. >>>>> To post to this group, send email to [email protected]. >>>>> Visit this group at http://groups.google.com/group/votca. >>>>> For more options, visit https://groups.google.com/d/optout. >>>> >>>> >>>> >>>> -- >>>> Christoph Junghans >>>> Web: http://www.compphys.de >>>> >>>> -- >>>> You received this message because you are subscribed to the Google Groups >>>> "votca" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an >>>> email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at http://groups.google.com/group/votca. >>>> For more options, visit https://groups.google.com/d/optout. >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at http://groups.google.com/group/votca. >>> For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
CMakeError.log
Description: Binary data
