Thanks very much, Christoph. I will try to update boost by gcc6.1 and will let you know if it works.
On Wednesday, May 24, 2017 at 3:53:25 PM UTC+2, Christoph Junghans wrote: > > 2017-05-24 2:00 GMT-06:00 Bensen-zjg Zhang <[email protected] > <javascript:>>: > > Dear VOTCA developers and users, > > > > > > I am trying to install the VOTCA software with build.sh on Centos system > but > > encountered some errors. Before install votca, I have installed all the > > dependencies: Boost, Git, GSL, FFTW3, EXPAT, PkgConfig, SQLITE3, > Doxygen, > > Gromacs. The gcc version is 6.1.0 and the current boost version is > 1.53.0. > > The installation command I used is: > > > > ./build.sh --prefix /usr/local/votca/ > > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/ > > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so --dev tools csg > kmc > > moo ctp ctp-tutorials ctp-manual > > > > With this building command, I got the following error information: > > /usr/local/lib/libboost_program_options.so: undefined reference to > > `std::__cxx11::basic_string<char, std::char_traits<char>, > > std::allocator<char> >::~basic_string()@GLIBCXX_3.4.21' > Errors like these usually mean your boost has been compiled with an > older (ABI-incompatible) version of gcc. > (I am guessing so, as you are using gcc-6.1 which relatively recent, > while boost-1.53 is actually more than 4 years old.) > > See the troubleshooting block of > > https://gcc.gnu.org/onlinedocs/gcc-5.2.0/libstdc++/manual/manual/using_dual_abi.html > > for details. > > Just install a newer version of boost using your gcc-6.1 and have > VOTCA compile against that one. > > Christoph > > > > > /usr/local/lib/libboost_program_options.so: undefined reference to > > `std::logic_error::logic_error(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21' > > /usr/local/lib/libboost_program_options.so: undefined reference to > > `std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>, > > std::allocator<wchar_t> >::~basic_string()@GLIBCXX_3.4.21' > > /usr/local/lib/libboost_program_options.so: undefined reference to > `operator > > delete(void*, unsigned long)@CXXABI_1.3.9' > > /usr/local/lib/libboost_program_options.so: undefined reference to > > `std::__cxx11::basic_string<char, std::char_traits<char>, > > std::allocator<char> >::_M_replace(unsigned long, unsigned long, char > > const*, unsigned long)@GLIBCXX_3.4.21' > > /usr/local/lib/libboost_program_options.so: undefined reference to > > `std::__cxx11::basic_string<char, std::char_traits<char>, > > std::allocator<char> >::find(char const*, unsigned long, unsigned long) > > const@GLIBCXX_3.4.21' > > /usr/local/lib/libboost_filesystem.so: undefined reference to > > `std::__cxx11::basic_string<char, std::char_traits<char>, > > std::allocator<char> >::rfind(char, unsigned long) const@GLIBCXX_3.4.21' > > collect2: ld returned 1 exit status > > make[2]: *** [src/tools/votca_property] Error 1 > > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error 2 > > make: *** [all] Error 2 > > > > When searching from the previous discussions, I found that I may need to > > specify the Boost path. As a result, I tried: > > > > ./build.sh --prefix /usr/local/votca/ > > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/ > > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so > > -DBoost_INCLUDE_DIR=/usr/local/include/boost/ > > > -DBoost_PROGRAM_OPTIONS_LIBRARY=/usr/local/lib/libboost_program_options.so > > -DBoost_FILESYSTEM_LIBRARY=/usr/local/lib/libboost_filesystem.so --dev > tools > > csg kmc moo ctp ctp-tutorials ctp-manual > > > > > > This time, votca can not find the boost package? I have no idea why it > can > > not find boost since I have specified the path to it! > > For more information, I have attached the entire on screen printed > > information and the cmake error file. The file names with "_noBoostPath" > > correspond to the first building command (no boost path is specified) > while > > the file names with "_withBoostPath" correspond to the second building > > command. > > > > By the way, when using the second building command, votca find both GSL > and > > MKL libraries, so I have also tried to disable the mkl library with > > -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON, but not change happens. > > > > Thank you very much for your kind help! > > With best regards, > > Shiyun > > > > -- > > You received this message because you are subscribed to the Google > Groups > > "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an > > email to [email protected] <javascript:>. > > To post to this group, send email to [email protected] > <javascript:>. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
