Dear Christoph,
I have install the latest BOOST version 1.64.0. However, I have encountered
other errors: 'Make_array' is not a member of 'boost::serialization'.
In fact, I have used this version of BOOST at the beginning and this error
occured. Denis suggested me to downgrade my boost version and I found from
the votca website that 1.53 is a recommanded version. That's why I used 1.53
Attached are the on screen information and cmake error information. Please
check it. Thank you so much!
Best regards,
Shiyun
在 2017年5月24日星期三 UTC+8下午9:53:25，Christoph Junghans写道：
>
> 2017-05-24 2:00 GMT-06:00 Bensen-zjg Zhang <[email protected]
> <javascript:>>:
> > Dear VOTCA developers and users,
> >
> >
> > I am trying to install the VOTCA software with build.sh on Centos system
> but
> > encountered some errors. Before install votca, I have installed all the
> > dependencies: Boost, Git, GSL, FFTW3, EXPAT, PkgConfig, SQLITE3,
> Doxygen,
> > Gromacs. The gcc version is 6.1.0 and the current boost version is
> 1.53.0.
> > The installation command I used is:
> >
> > ./build.sh --prefix /usr/local/votca/
> > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/
> > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so --dev tools csg
> kmc
> > moo ctp ctp-tutorials ctp-manual
> >
> > With this building command, I got the following error information:
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> > `std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >::~basic_string()@GLIBCXX_3.4.21'
> Errors like these usually mean your boost has been compiled with an
> older (ABI-incompatible) version of gcc.
> (I am guessing so, as you are using gcc-6.1 which relatively recent,
> while boost-1.53 is actually more than 4 years old.)
>
> See the troubleshooting block of
>
> https://gcc.gnu.org/onlinedocs/gcc-5.2.0/libstdc++/manual/manual/using_dual_abi.html
>
> for details.
>
> Just install a newer version of boost using your gcc-6.1 and have
> VOTCA compile against that one.
>
> Christoph
>
>
>
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> > `std::logic_error::logic_error(std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21'
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> > `std::__cxx11::basic_string<wchar_t, std::char_traits<wchar_t>,
> > std::allocator<wchar_t> >::~basic_string()@GLIBCXX_3.4.21'
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> `operator
> > delete(void*, unsigned long)@CXXABI_1.3.9'
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> > `std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >::_M_replace(unsigned long, unsigned long, char
> > const*, unsigned long)@GLIBCXX_3.4.21'
> > /usr/local/lib/libboost_program_options.so: undefined reference to
> > `std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >::find(char const*, unsigned long, unsigned long)
> > const@GLIBCXX_3.4.21'
> > /usr/local/lib/libboost_filesystem.so: undefined reference to
> > `std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >::rfind(char, unsigned long) const@GLIBCXX_3.4.21'
> > collect2: ld returned 1 exit status
> > make[2]: *** [src/tools/votca_property] Error 1
> > make[1]: *** [src/tools/CMakeFiles/votca_property.dir/all] Error 2
> > make: *** [all] Error 2
> >
> > When searching from the previous discussions, I found that I may need to
> > specify the Boost path. As a result, I tried:
> >
> > ./build.sh --prefix /usr/local/votca/
> > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/
> > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so
> > -DBoost_INCLUDE_DIR=/usr/local/include/boost/
> >
> -DBoost_PROGRAM_OPTIONS_LIBRARY=/usr/local/lib/libboost_program_options.so
> > -DBoost_FILESYSTEM_LIBRARY=/usr/local/lib/libboost_filesystem.so --dev
> tools
> > csg kmc moo ctp ctp-tutorials ctp-manual
> >
> >
> > This time, votca can not find the boost package? I have no idea why it
> can
> > not find boost since I have specified the path to it!
> > For more information, I have attached the entire on screen printed
> > information and the cmake error file. The file names with "_noBoostPath"
> > correspond to the first building command (no boost path is specified)
> while
> > the file names with "_withBoostPath" correspond to the second building
> > command.
> >
> > By the way, when using the second building command, votca find both GSL
> and
> > MKL libraries, so I have also tried to disable the mkl library with
> > -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON, but not change happens.
> >
> > Thank you very much for your kind help!
> > With best regards,
> > Shiyun
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups
> > "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an
> > email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]
> <javascript:>.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
--
You received this message because you are subscribed to the Google Groups
"votca" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/votca.
For more options, visit https://groups.google.com/d/optout.
Determining if the pthread_create exist failed with the following output:
Change Dir: /home/xiong/votca/src/tools/CMakeFiles/CMakeTmp
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Building C object CMakeFiles/cmTC_15436.dir/CheckSymbolExists.c.o
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File /home/xiong/votca/src/tools/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
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return ((int*)(&pthread_create))[argc];
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return 0;
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Change Dir: /home/xiong/votca/src/tools/CMakeFiles/CMakeTmp
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zsymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgeru'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sgemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ctrsv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_ddot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csymm'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zdotu_sub'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_sdsdot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgerc'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_scasum'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zscal'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zdotc_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cscal'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_ssymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cdotc_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zher2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_saxpy'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyrk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_strmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dgemv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_dsymv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_sswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_isamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zhemv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_sasum'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_strsm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_drot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ztrsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_izamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssymv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zgeru'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sger'
/usr/local/lib/libgsl.so: undefined reference to `cblas_srot'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zdscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zher2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyr'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrmm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zgerc'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsyr2k'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_zgemv'
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/usr/local/lib/libgsl.so: undefined reference to `cblas_cswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_daxpy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csyrk'
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int main(void) {
#ifndef _AIX
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return 0;
}
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int main(int argc, char** argv)
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/usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_546b6.dir/link.txt
--verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=gsl_linalg_QR_decomp
CMakeFiles/cmTC_546b6.dir/CheckFunctionExists.c.o -o cmTC_546b6
-Wl,-rpath,/usr/local/lib -rdynamic /usr/local/lib/libgsl.so
/usr/local/lib/libgsl.so: undefined reference to `cblas_ctrmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zsymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgeru'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sgemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ctrsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sgemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_srotg'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zgemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cdotu_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dznrm2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ddot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cher2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zdotu_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sdot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sdsdot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgerc'
/usr/local/lib/libgsl.so: undefined reference to `cblas_scnrm2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ctrmm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_strmm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zcopy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsyrk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cherk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zherk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zher'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ztrmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_drotmg'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_scopy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_scasum'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_drotg'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zdotc_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_caxpy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zsyr2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyr2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csyr2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ztrsm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ctrsm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cdotc_sub'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zher2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_saxpy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_idamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_snrm2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsdot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cher'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dger'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cher2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dzasum'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsyr2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyrk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_strmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dgemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dasum'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsymv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_srotm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrmv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_isamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zhemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zaxpy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dcopy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sasum'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsyr'
/usr/local/lib/libgsl.so: undefined reference to `cblas_strsm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_drot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ztrsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_izamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssymv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_chemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zgeru'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_sger'
/usr/local/lib/libgsl.so: undefined reference to `cblas_srot'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsymm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ztrmm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zdscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zher2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyr'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrmm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zgerc'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dsyr2k'
/usr/local/lib/libgsl.so: undefined reference to `cblas_chemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dnrm2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_drotm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_icamax'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zgemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zhemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cgemv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ssyr2'
/usr/local/lib/libgsl.so: undefined reference to `cblas_strsv'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dscal'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dgemm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_srotmg'
/usr/local/lib/libgsl.so: undefined reference to `cblas_dtrsm'
/usr/local/lib/libgsl.so: undefined reference to `cblas_ccopy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_zsyrk'
/usr/local/lib/libgsl.so: undefined reference to `cblas_cswap'
/usr/local/lib/libgsl.so: undefined reference to `cblas_daxpy'
/usr/local/lib/libgsl.so: undefined reference to `cblas_csyrk'
collect2: ld returned 1 exit status
gmake[1]: *** [cmTC_546b6] Error 1
gmake[1]: Leaving directory `/home/xiong/votca/src/tools/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_546b6/fast] Error 2
Performing C SOURCE FILE Test HAVE_AIX failed with the following output:
Change Dir: /home/xiong/votca/src/tools/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_5ecfb/fast"
/usr/bin/gmake -f CMakeFiles/cmTC_5ecfb.dir/build.make
CMakeFiles/cmTC_5ecfb.dir/build
gmake[1]: Entering directory `/home/xiong/votca/src/tools/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_5ecfb.dir/src.c.o
/usr/bin/cc -DHAVE_AIX -o CMakeFiles/cmTC_5ecfb.dir/src.c.o -c
/home/xiong/votca/src/tools/CMakeFiles/CMakeTmp/src.c
/home/xiong/votca/src/tools/CMakeFiles/CMakeTmp/src.c:3:8: error: #error
gmake[1]: *** [CMakeFiles/cmTC_5ecfb.dir/src.c.o] Error 1
gmake[1]: Leaving directory `/home/xiong/votca/src/tools/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_5ecfb/fast] Error 2
Source file was:
int main(void) {
#ifndef _AIX
#error
#endif
return 0;
}
[32;01mThis is VOTCA build.sh, version 2.1.3[0m
Install prefix is '/usr/local/votca/'
[34;01mUsing 29 jobs for make/ninja[0m
[32;01mWorking on tools[0m
[34;01mSource dir (tools) is already there - skipping checkout[0m
[34;01mcmake -DCMAKE_INSTALL_PREFIX='/usr/local/votca/'
-DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/
-DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .[0m
-- Found Git: /usr/bin/git (found version "2.3.0")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.64.0
-- Found the following Boost libraries:
-- program_options
-- filesystem
-- system
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.2")
-- Checking for module 'gsl'
-- Found gsl, version 2.3
-- Found GSL: /usr/local/lib/libgsl.so
-- Looking for gsl_linalg_QR_decomp in /usr/local/lib/libgsl.so;
-- Looking for gsl_linalg_QR_decomp in /usr/local/lib/libgsl.so; - not found
-- Found GSLCBLAS: /usr/local/lib/libgslcblas.so
-- Looking for cblas_dsyrk in /usr/local/lib/libgslcblas.so;
-- Looking for cblas_dsyrk in /usr/local/lib/libgslcblas.so; - found
-- Looking for gsl_linalg_QR_lssolve in
/usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so;
-- Looking for gsl_linalg_QR_lssolve in
/usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so; - found
-- Intel(R) MKL was found:
MKL_INCLUDE_DIRS:
/public/software/compiler/intel/composer_xe_2015.2.164/mkl/include
MKL_LIBRARY_DIRS:
/public/software/compiler/intel/composer_xe_2015.2.164/mkl/lib/intel64;/public/software/compiler/intel/composer_xe_2015.2.164/compiler/lib/intel64
MKL_LIBRARIES:
/public/software/compiler/intel/composer_xe_2015.2.164/mkl/lib/intel64/libmkl_rt.so;/public/software/compiler/intel/composer_xe_2015.2.164/compiler/lib/intel64/libiomp5.so;/public/software/compiler/intel/composer_xe_2015.2.164/compiler/lib/intel64/libimf.so
-- Checking for module 'fftw3'
-- No package 'fftw3' found
-- Found FFTW3: /usr/local/fftw_shared/lib/libfftw3.so
-- Looking for fftw_plan_r2r_1d in /usr/local/fftw_shared/lib/libfftw3.so;
-- Looking for fftw_plan_r2r_1d in /usr/local/fftw_shared/lib/libfftw3.so; -
found
-- Looking for assert.h
-- Looking for assert.h - found
-- Looking for math.h
-- Looking for math.h - found
-- Looking for stdio.h
-- Looking for stdio.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- Looking for C++ include fstream
-- Looking for C++ include fstream - found
-- Looking for C++ include functional
-- Looking for C++ include functional - found
-- Looking for C++ include iostream
-- Looking for C++ include iostream - found
-- Looking for C++ include limits
-- Looking for C++ include limits - found
-- Looking for C++ include list
-- Looking for C++ include list - found
-- Looking for C++ include map
-- Looking for C++ include map - found
-- Looking for C++ include ostream
-- Looking for C++ include ostream - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for C++ include stack
-- Looking for C++ include stack - found
-- Looking for C++ include stdexcept
-- Looking for C++ include stdexcept - found
-- Looking for C++ include string
-- Looking for C++ include string - found
-- Looking for C++ include vector
-- Looking for C++ include vector - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Checking for module 'expat'
-- Found expat, version 2.2.0
-- Found EXPAT: /usr/lib64/libexpat.so
-- Checking for module 'sqlite3'
-- No package 'sqlite3' found
-- Found SQLITE3: /usr/lib64/libsqlite3.so
-- Performing Test HAVE_AIX
-- Performing Test HAVE_AIX - Failed
-- Found Doxygen: /usr/bin/doxygen (found version "1.6.1")
--
-- The following OPTIONAL packages have been found:
* Git
* GSL
* MKL
* FFTW3
* EXPAT
* PkgConfig
* SQLITE3
* Doxygen
-- The following REQUIRED packages have been found:
* Threads
* Boost (required version >= 1.39.0)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/xiong/votca/src/tools
[32;01mcleaning tools[0m
[32;01mbuidling tools[0m
Scanning dependencies of target intel
[ 0%] Built target votca_tools_manpages
[ 2%] Creating directories for 'intel'
[ 2%] Built target gitversion
[ 4%] Performing download step (download, verify and extract) for 'intel'
-- verifying file...
file='/home/xiong/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip'
-- File already exists and hash match (skip download):
file='/home/xiong/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip'
MD5='b957ee63a2167ad21b650b47726cd55c'
-- extracting...
src='/home/xiong/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip'
dst='/home/xiong/votca/src/tools/intel/src/intel'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 6%] No patch step for 'intel'
[ 8%] No update step for 'intel'
[ 10%] No configure step for 'intel'
[ 12%] No build step for 'intel'
[ 14%] No install step for 'intel'
[ 17%] Completed 'intel'
[ 17%] Built target intel
Scanning dependencies of target votca_tools
[ 19%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o
[ 21%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o
[ 25%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/application.cc.o
[ 25%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o
[ 27%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o
[ 29%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o
[ 31%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o
[ 36%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o
[ 36%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o
[ 38%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o
[ 42%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o
[ 42%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o
[ 44%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o
[ 46%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o
[ 55%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o
[ 53%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parsexml.cc.o
[ 57%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/property.cc.o
[ 59%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/table.cc.o
[ 61%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o
[ 63%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random2.cc.o
[ 68%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/version.cc.o
[ 68%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o
[ 70%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o
[ 76%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/database.cc.o
[ 76%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o
[ 78%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/cholesky.cc.o
[ 80%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/eigensystems.cc.o
[ 82%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/invert.cc.o
[ 85%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/qrsolve.cc.o
[ 87%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/svd.cc.o
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/table.h:22,
from /home/xiong/votca/src/tools/src/libtools/table.cc:21:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/qrsolve.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/svd.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home/xiong/votca/src/tools/src/libtools/propertyiomanipulator.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/table.cc.o] Error 1
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home/xiong/votca/src/tools/src/libtools/propertyiomanipulator.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/eigensystems.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/cholesky.cc.o]
Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/invert.cc.o]
Error 1
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from /home/xiong/votca/src/tools/src/libtools/property.cc:28:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from /home/xiong/votca/src/tools/src/libtools/property.cc:28:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/qrsolve.cc.o]
Error 1
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/application.h:22,
from
/home/xiong/votca/src/tools/src/libtools/application.cc:19:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/svd.cc.o]
Error 1
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/application.h:22,
from
/home/xiong/votca/src/tools/src/libtools/application.cc:19:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/property.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1
make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make: *** [all] Error 2
[root@node1 src]# vi onScreenInfo_boost1.64.txt
[root@node1 src]# ./build.sh --prefix /usr/local/votca/
-DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/
-DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so --dev tools csg kmc moo
ctp ctp-tutorials ctp-manual > onScreenInfo_boost1.64.txt
CMake Warning at /usr/local/share/cmake-3.7/Modules/FindBoost.cmake:761
(message):
Imported targets not available for Boost version 106400
Call Stack (most recent call first):
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:865
(_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:1454
(_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:58 (find_package)
CMake Warning at /usr/local/share/cmake-3.7/Modules/FindBoost.cmake:761
(message):
Imported targets not available for Boost version 106400
Call Stack (most recent call first):
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:865
(_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:1454
(_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:58 (find_package)
CMake Warning at /usr/local/share/cmake-3.7/Modules/FindBoost.cmake:761
(message):
Imported targets not available for Boost version 106400
Call Stack (most recent call first):
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:865
(_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake-3.7/Modules/FindBoost.cmake:1454
(_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:58 (find_package)
-- MKL found, overloading uBLAS prod()
Current git revision is 6a1c642
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/table.h:22,
from
/home/xiong/votca/src/tools/include/votca/tools/histogramnew.h:25,
from
/home/xiong/votca/src/tools/src/libtools/histogramnew.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/spline.h:21,
from /home/xiong/votca/src/tools/src/libtools/spline.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/spline.h:21,
from
/home/xiong/votca/src/tools/include/votca/tools/linspline.h:21,
from /home/xiong/votca/src/tools/src/libtools/linspline.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/spline.h:21,
from
/home/xiong/votca/src/tools/include/votca/tools/cubicspline.h:21,
from
/home/xiong/votca/src/tools/src/libtools/cubicspline.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/spline.h:21,
from
/home/xiong/votca/src/tools/include/votca/tools/akimaspline.h:21,
from
/home/xiong/votca/src/tools/src/libtools/akimaspline.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o] Error 1
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from /home/xiong/votca/src/tools/src/libtools/linalg.cc:17:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /home/xiong/votca/src/tools/src/libtools/linspline.cc:19:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from /home/xiong/votca/src/tools/src/libtools/linalg.cc:17:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/src/libtools/cubicspline.cc:19:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/src/libtools/akimaspline.cc:19:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/eigensystems.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/cholesky.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o] Error 1
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/invert.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o] Error 1
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/eigensystems.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/cholesky.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/matrix.h:23,
from /home/xiong/votca/src/tools/src/libtools/matrix.cc:20:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/invert.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/qrsolve.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/matrix.h:23,
from /home/xiong/votca/src/tools/src/libtools/matrix.cc:20:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/matrix.hpp:18,
from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/svd.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from
/home/xiong/votca/src/tools/include/votca/tools/table.h:22,
from /home/xiong/votca/src/tools/src/libtools/table.cc:21:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/qrsolve.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from
/home/xiong/votca/src/tools/intel/src/intel/MKL_and_boost_example/headers/mkl_boost_ublas_matrix_prod.hpp:37,
from
/home/xiong/votca/src/tools/include/votca/tools/linalg.h:24,
from
/home/xiong/votca/src/tools/src/libtools/linalg/mkl/svd.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home/xiong/votca/src/tools/src/libtools/propertyiomanipulator.cc:18:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/propertyiomanipulator.h:23,
from
/home/xiong/votca/src/tools/src/libtools/propertyiomanipulator.cc:18:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/table.cc.o] Error 1
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/eigensystems.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/cholesky.cc.o]
Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/invert.cc.o]
Error 1
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from /home/xiong/votca/src/tools/src/libtools/property.cc:28:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/qrsolve.cc.o]
Error 1
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from /home/xiong/votca/src/tools/src/libtools/property.cc:28:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
In file included from /usr/local/include/boost/numeric/ublas/vector.hpp:21,
from /usr/local/include/boost/numeric/ublas/lu.hpp:19,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/application.h:22,
from
/home/xiong/votca/src/tools/src/libtools/application.cc:19:
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::unbounded_array<T, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:299: error: ‘make_array’ is
not a member of ‘boost::serialization’
/usr/local/include/boost/numeric/ublas/storage.hpp: In member function ‘void
boost::numeric::ublas::bounded_array<T, N, ALLOC>::serialize(Archive&, unsigned
int)’:
/usr/local/include/boost/numeric/ublas/storage.hpp:494: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg/mkl/svd.cc.o]
Error 1
make[2]: ***
[src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o] Error 1
In file included from /usr/local/include/boost/numeric/ublas/triangular.hpp:16,
from /usr/local/include/boost/numeric/ublas/lu.hpp:20,
from /home/xiong/votca/src/tools/include/votca/tools/vec.h:25,
from
/home/xiong/votca/src/tools/include/votca/tools/property.h:31,
from
/home/xiong/votca/src/tools/include/votca/tools/application.h:22,
from
/home/xiong/votca/src/tools/src/libtools/application.cc:19:
/usr/local/include/boost/numeric/ublas/matrix.hpp: In member function ‘void
boost::numeric::ublas::c_matrix<T, M, N>::serialize(Archive&, unsigned int)’:
/usr/local/include/boost/numeric/ublas/matrix.hpp:5977: error: ‘make_array’ is
not a member of ‘boost::serialization’
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/property.cc.o] Error 1
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1
make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make: *** [all] Error 2
