Hi Christoph, thanks for your response. On Friday, September 7, 2018 at 7:05:28 PM UTC+1, Christoph Junghans wrote: > > On Fri, Sep 7, 2018 at 11:03 AM 'Andrey Brukhno' via votca > <[email protected] <javascript:>> wrote: > > > > Hello, > > > > Upon a successful installation of the VOTCA's development (master) > branch I get this error: > > > > ~/votca-dev/bin/csg_map > > /home/andrey/votca-dev/bin/csg_map: error while loading shared > libraries: libvotca_csg.so.5: cannot open shared object file: No such file > or directory > That just means you have to source VOTCARC.bash >
Yes, sorry I missed to include that from my terminal output (I meant to show that resulting error): --- build > ~/votca-dev/bin/csg_map /home/andrey/votca-dev/bin/csg_map: error while loading shared libraries: libvotca_csg.so.5: cannot open shared object file: No such file or directory build > . ~/votca-dev/bin/VOTCARC.bash build > ~/votca-dev/bin/csg_map /home/andrey/votca-dev/bin/csg_map: error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory --- Note that I tried to install the 'master' twice, repeating the entire process, starting with "git clone -b master ...", both times I ended up with the above error message about missing libhdf5.so.101, whereas it was installed and the installation of 'stable' branch did not complain at all. > We also recently added the option to inject an rpath on Linux, i.e. > -DENABLE_RPATH_INJECT=ON, then the location of libvotca_csg.so.5 will > be stored in csg_map itself. > What does it help? (before it seemed to work fine without it) > > > > > I tried to reinstall libhdf5-dev twice, also checked for all the other > dependencies, everything looks fine, yet the error. > Not sure how this related to libhdf5, the above error refers to > libvotca_csg.so.5, right? > > > > > Meanwhile the 'stable' branch (1.4.1 apparently) did install correctly > and appears to work. > > > > Would appreciate any clues or a fix. > > > > Thanks > > Andrey > > > > PS: for reference, below is the output messages from cmake for my > attempted installation of 'master' > > > > build > cmake -DBUILD_CSGAPPS=ON -DBUILD_TOOLS=ON -DWITH_GMX=ON > -DWITH_SQLITE3=OFF -DCMAKE_INSTALL_PREFIX=$HOME/votca-dev .. > And yeah there is no BUILD_TOOLS option. > Okay, I noticed. I think including it did not affect anything (?). Andrey > > > -- Boost version: 1.58.0 > > -- Found the following Boost libraries: > > -- program_options > > -- filesystem > > -- system > > -- Intel(R) MKL could not be found. > > -- Boost version: 1.58.0 > > -- Found the following Boost libraries: > > -- program_options > > -- filesystem > > -- system > > -- Intel(R) MKL could not be found. > > -- Checking for module 'libgromacs_d' > > -- No package 'libgromacs_d' found > > -- Could NOT find GMX (missing: GMX_EXECUTABLE) > > -- Boost version: 1.58.0 > > -- Found the following Boost libraries: > > -- program_options > > -- Intel(R) MKL could not be found. > > -- Could NOT find CLANG_FORMAT (missing: CLANG_FORMAT_EXECUTABLE) > > -- > > -- The following OPTIONAL packages have been found: > > > > * Git > > * FFTW3 > > * EXPAT > > * TXT2TAGS > > * UnixCommands > > * HDF5 > > * Eigen3 > > * PkgConfig > > * Doxygen > > > > -- The following REQUIRED packages have been found: > > > > * Threads > > * GROMACS (required version >= 20160000) > > * Boost (required version >= 1.57.0) > > * EIGEN3 (required version >= 3.3.0) > > * VOTCA_TOOLS > > * VOTCA_CSG > > > > -- The following OPTIONAL packages have not been found: > > > > * MKL > > > > -- Configuring done > > -- Generating done > > CMake Warning: > > Manually-specified variables were not used by the project: > > > > BUILD_TOOLS > > > > > > -- Build files have been written to: > /home/andrey/Progs/votca-dev/votca-1.5-master/build > > > > [bg:0](st:0) andrey@AndysHome: build > make > > ... > > > > -- > > You received this message because you are subscribed to the Google > Groups "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected] <javascript:>. > > To post to this group, send email to [email protected] > <javascript:>. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
