Hi Christoph,
I am getting these kind of Eigen 3 errors when building on Centos 7. I
have eigen3 installed. I am attempting to install from the master version
files downloaded today via the README. What am I missing with eigen3? It
seems to detect it.
See below for output
Thanks.
Josh
This is VOTCA's next generation build system.
Usage:
prefix=WHERE/TO/INSTALL/VOTCA
version=master # or 'stable' or 'v1.4.1'
git clone -b ${version} --recursive https://github.com/votca/votca.git
cd votca
mkdir build
cd build
cmake -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON
-DCMAKE_INSTALL_PREFIX=${prefix} ..
make -j<number of cores>
make install
[/usr/include/eigen3]$ ls -lrt
total 8
-rw-r--r--. 1 root root 216 Jun 15 2017 signature_of_eigen3_matrix_library
drwxr-xr-x. 3 root root 18 May 26 2018 unsupported
drwxr-xr-x. 3 root root 4096 Oct 29 12:01 Eigen
cmake3 -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON
-DEIGEN3_INCLUDE_DIR=/usr/include/eigen3 -DCMAKE_INSTALL_PREFIX=${prefix} ..
-- Boost version: 1.68.0
-- Found the following Boost libraries:
-- program_options
-- filesystem
-- system
-- 'Intel OpenMP' used for MKL parallelisation
-- Found Eigen3: /usr/share/eigen3
-- Boost version: 1.68.0
-- Found the following Boost libraries:
-- program_options
-- filesystem
-- system
-- Found Eigen3: /usr/share/eigen3
-- Found VOTCA_TOOLS:
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5:
/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
(found version "1.8.12") found components: C
-- Found VOTCA_CSG:
-- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
-- Found HDF5:
/usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
(found suitable version "1.8.12", minimum required is "1.8") found
components: CXX
-- Boost version: 1.68.0
-- Found the following Boost libraries:
-- program_options
-- serialization
-- filesystem
-- system
-- timer
-- chrono
-- Found Eigen3: /usr/share/eigen3
-- Found VOTCA_TOOLS:
-- Found VOTCA_CSG:
-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but
required is at least "7.0.1" (found /bin/clang-format)
-- The following OPTIONAL packages have been found:
* Git
* MKL
* TXT2TAGS
* UnixCommands
* OpenMP
* PkgConfig
* Doxygen
-- The following REQUIRED packages have been found:
* FFTW3
* EXPAT
* Threads
* GROMACS (required version >= 20160000)
* LIBXC
* HDF5 (required version >= 1.8)
* Boost (required version >= 1.57.0)
* Eigen3 (required version >= 3.3.0)
-- The following OPTIONAL packages have not been found:
* CLANG_FORMAT (required version >= 7.0.1)
-- Configuring done
CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
Target "votca_tools" links to target "Eigen3::Eigen" but the target was
not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at tools/src/tools/CMakeLists.txt:3 (add_executable):
Target "votca_property" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_resample" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_map" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_density" links to target "Eigen3::Eigen" but the target was
not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_property" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the
target
was not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
Target "template_threaded" links to target "Eigen3::Eigen" but the target
was not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
Target "template_serial" links to target "Eigen3::Eigen" but the target
was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "fluctuations" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "orientcorr" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "sphericalorder" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "part_dist" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "partial_rdf" links to target "Eigen3::Eigen" but the target was
not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "traj_force" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
Target "radii" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
Target "votca_tools" links to target "Eigen3::Eigen" but the target was
not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_map" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_property" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_resample" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_density" links to target "Eigen3::Eigen" but the target was
not
found. Perhaps a find_package() call is missing for an IMPORTED target,
or
an ALIAS target is missing?
CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the
target
was not found. Perhaps a find_package() call is missing for an IMPORTED
target, or an ALIAS target is missing?
-- Generating done
-- Build files have been written to: /apps/votca/votca/build
On Saturday, July 14, 2018 at 8:40:46 AM UTC-4, Christoph Junghans wrote:
> On Fri, Jul 13, 2018 at 9:31 AM, Wujie Wang <[email protected]
> <javascript:>> wrote:
> > Many thanks for your prompt reply.
> >
> > We are using Ubuntu 16.04 and it seems that the base version for EIGEN3
> is
> > 3.3~beta1-2, according to
> http://neuro.debian.net/pkgs/libeigen3-dev.html
> >
> > I found a similar issue here:
> > https://github.com/OpenNMT/CTranslate/issues/22
> >
> > I am wondering if there is any hint on upgrading to 3.3 here other than
> > apt-get install?
> Eigen3 is header-based library, so you can just get the tarball,
> unpack it and point CMake to it with
> -DEIGEN3_INCLUDE_DIR=/path/to/your/eigen.
>
> Christoph
> >
> > Thanks
> >
> >
> > On Thu, Jul 12, 2018 at 11:11 PM, Christoph Junghans <[email protected]
> <javascript:>>
> > wrote:
> >>
> >>
> >>
> >> On Thu, Jul 12, 2018 at 21:06 <[email protected] <javascript:>> wrote:
> >>>
> >>> Hey VOTCA community
> >>>
> >>> I am new to VOTCA and CMAKE.
> >>> I was trying to install votca. During the build process, it outputs a
> >>> cmake error:
> >>>
> >>> CMake Error at
> >>> /usr/share/cmake-3.5/Modules/FindPackageHandleStandardArgs.cmake:148
> >>> (message):
> >>> Could NOT find EIGEN3: Found unsuitable version "3.2.92", but
> required
> >>> is
> >>> at least "3.3.0" (found /usr/include/eigen3)
> >>>
> >>>
> >>> While my eigen3 version is 3.3~beta1-2, so it gets confused over the
> >>> EIGEN3 version?
> >>
> >> A beta is a pre-release version and hence counts as before 3.3.0!
> >>
> >> Try to update your version!
> >>
> >> Christoph
> >>>
> >>>
> >>> Would appreciate any help and hint
> >>>
> >>> Thanks
> >>>
> >>> --
> >>> You received this message because you are subscribed to the Google
> Groups
> >>> "votca" group.
> >>> To unsubscribe from this group and stop receiving emails from it, send
> an
> >>> email to [email protected] <javascript:>.
> >>> To post to this group, send email to [email protected]
> <javascript:>.
> >>> Visit this group at https://groups.google.com/group/votca.
> >>> For more options, visit https://groups.google.com/d/optout.
> >>
> >> --
> >> Christoph Junghans
> >> Web: http://www.compphys.de
> >>
> >> --
> >> You received this message because you are subscribed to a topic in the
> >> Google Groups "votca" group.
> >> To unsubscribe from this topic, visit
> >> https://groups.google.com/d/topic/votca/kTwKhho7Is8/unsubscribe.
> >> To unsubscribe from this group and all its topics, send an email to
> >> [email protected] <javascript:>.
> >> To post to this group, send email to [email protected]
> <javascript:>.
> >> Visit this group at https://groups.google.com/group/votca.
> >> For more options, visit https://groups.google.com/d/optout.
> >
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups
> > "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an
> > email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]
> <javascript:>.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
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