On Tue, Oct 29, 2019 at 11:26 AM Joshua Moore <[email protected]> wrote:
>
> Problem appears to go away when I try the code downloaded as the "stable"
> version. I was trying the "master" version previously. Is the "master"
> version the development version?
Yes, master is the development version and stable the last released
version. There are packages for CentOs7 as well:
https://github.com/votca/votca/blob/master/share/doc/INSTALL.md#centos
Christoph
>
> Thanks.
>
> Josh
>
> On Tuesday, October 29, 2019 at 12:24:21 PM UTC-4, Joshua Moore wrote:
>>
>> Hi Christoph,
>>
>> I am getting these kind of Eigen 3 errors when building on Centos 7. I have
>> eigen3 installed. I am attempting to install from the master version files
>> downloaded today via the README. What am I missing with eigen3? It seems
>> to detect it.
>>
>> See below for output
>>
>> Thanks.
>>
>> Josh
>>
>>
>>
>> This is VOTCA's next generation build system.
>> Usage:
>> prefix=WHERE/TO/INSTALL/VOTCA
>> version=master # or 'stable' or 'v1.4.1'
>> git clone -b ${version} --recursive https://github.com/votca/votca.git
>> cd votca
>> mkdir build
>> cd build
>> cmake -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON -DCMAKE_INSTALL_PREFIX=${prefix}
>> ..
>> make -j<number of cores>
>> make install
>>
>> [/usr/include/eigen3]$ ls -lrt
>> total 8
>> -rw-r--r--. 1 root root 216 Jun 15 2017 signature_of_eigen3_matrix_library
>> drwxr-xr-x. 3 root root 18 May 26 2018 unsupported
>> drwxr-xr-x. 3 root root 4096 Oct 29 12:01 Eigen
>>
>> cmake3 -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON
>> -DEIGEN3_INCLUDE_DIR=/usr/include/eigen3 -DCMAKE_INSTALL_PREFIX=${prefix} ..
>>
>>
>> -- Boost version: 1.68.0
>> -- Found the following Boost libraries:
>> -- program_options
>> -- filesystem
>> -- system
>> -- 'Intel OpenMP' used for MKL parallelisation
>> -- Found Eigen3: /usr/share/eigen3
>> -- Boost version: 1.68.0
>> -- Found the following Boost libraries:
>> -- program_options
>> -- filesystem
>> -- system
>> -- Found Eigen3: /usr/share/eigen3
>> -- Found VOTCA_TOOLS:
>> -- HDF5: Using hdf5 compiler wrapper to determine C configuration
>> -- Found HDF5:
>> /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
>> (found version "1.8.12") found components: C
>> -- Found VOTCA_CSG:
>> -- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
>> -- Found HDF5:
>> /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
>> (found suitable version "1.8.12", minimum required is "1.8") found
>> components: CXX
>> -- Boost version: 1.68.0
>> -- Found the following Boost libraries:
>> -- program_options
>> -- serialization
>> -- filesystem
>> -- system
>> -- timer
>> -- chrono
>> -- Found Eigen3: /usr/share/eigen3
>> -- Found VOTCA_TOOLS:
>> -- Found VOTCA_CSG:
>> -- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required
>> is at least "7.0.1" (found /bin/clang-format)
>> -- The following OPTIONAL packages have been found:
>> * Git
>> * MKL
>> * TXT2TAGS
>> * UnixCommands
>> * OpenMP
>> * PkgConfig
>> * Doxygen
>> -- The following REQUIRED packages have been found:
>> * FFTW3
>> * EXPAT
>> * Threads
>> * GROMACS (required version >= 20160000)
>> * LIBXC
>> * HDF5 (required version >= 1.8)
>> * Boost (required version >= 1.57.0)
>> * Eigen3 (required version >= 3.3.0)
>> -- The following OPTIONAL packages have not been found:
>> * CLANG_FORMAT (required version >= 7.0.1)
>> -- Configuring done
>> CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
>> Target "votca_tools" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at tools/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "votca_property" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
>> Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
>> Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_resample" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_map" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_density" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_property" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
>> Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
>> Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the target
>> was not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
>> Target "template_threaded" links to target "Eigen3::Eigen" but the target
>> was not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/share/template/CMakeLists.txt:3 (add_executable):
>> Target "template_serial" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "fluctuations" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "orientcorr" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "sphericalorder" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "part_dist" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "partial_rdf" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "traj_force" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csgapps/CMakeLists.txt:50 (add_executable):
>> Target "radii" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
>> Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/libxtp/CMakeLists.txt:10 (add_library):
>> Target "votca_xtp" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_map" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_tools" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_run" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_dump" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at xtp/src/tools/CMakeLists.txt:4 (add_executable):
>> Target "xtp_parallel" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at tools/src/libtools/CMakeLists.txt:8 (add_library):
>> Target "votca_tools" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
>> Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/libcsg/CMakeLists.txt:12 (add_library):
>> Target "votca_csg" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_reupdate" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_map" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_dump" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_property" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_resample" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_stat" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_fmatch" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_gmxtopol" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_dlptopol" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_density" links to target "Eigen3::Eigen" but the target was not
>> found. Perhaps a find_package() call is missing for an IMPORTED target, or
>> an ALIAS target is missing?
>>
>> CMake Error at csg/src/tools/CMakeLists.txt:3 (add_executable):
>> Target "csg_imc_solve" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:9 (add_executable):
>> Target "csg_boltzmann" links to target "Eigen3::Eigen" but the target was
>> not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> CMake Error at csg/src/csg_boltzmann/CMakeLists.txt:6 (add_library):
>> Target "votca_csg_boltzmann" links to target "Eigen3::Eigen" but the target
>> was not found. Perhaps a find_package() call is missing for an IMPORTED
>> target, or an ALIAS target is missing?
>>
>> -- Generating done
>> -- Build files have been written to: /apps/votca/votca/build
>>
>>
>> On Saturday, July 14, 2018 at 8:40:46 AM UTC-4, Christoph Junghans wrote:
>>>
>>> On Fri, Jul 13, 2018 at 9:31 AM, Wujie Wang <[email protected]> wrote:
>>> > Many thanks for your prompt reply.
>>> >
>>> > We are using Ubuntu 16.04 and it seems that the base version for EIGEN3 is
>>> > 3.3~beta1-2, according to http://neuro.debian.net/pkgs/libeigen3-dev.html
>>> >
>>> > I found a similar issue here:
>>> > https://github.com/OpenNMT/CTranslate/issues/22
>>> >
>>> > I am wondering if there is any hint on upgrading to 3.3 here other than
>>> > apt-get install?
>>> Eigen3 is header-based library, so you can just get the tarball,
>>> unpack it and point CMake to it with
>>> -DEIGEN3_INCLUDE_DIR=/path/to/your/eigen.
>>>
>>> Christoph
>>> >
>>> > Thanks
>>> >
>>> >
>>> > On Thu, Jul 12, 2018 at 11:11 PM, Christoph Junghans <[email protected]>
>>> > wrote:
>>> >>
>>> >>
>>> >>
>>> >> On Thu, Jul 12, 2018 at 21:06 <[email protected]> wrote:
>>> >>>
>>> >>> Hey VOTCA community
>>> >>>
>>> >>> I am new to VOTCA and CMAKE.
>>> >>> I was trying to install votca. During the build process, it outputs a
>>> >>> cmake error:
>>> >>>
>>> >>> CMake Error at
>>> >>> /usr/share/cmake-3.5/Modules/FindPackageHandleStandardArgs.cmake:148
>>> >>> (message):
>>> >>> Could NOT find EIGEN3: Found unsuitable version "3.2.92", but required
>>> >>> is
>>> >>> at least "3.3.0" (found /usr/include/eigen3)
>>> >>>
>>> >>>
>>> >>> While my eigen3 version is 3.3~beta1-2, so it gets confused over the
>>> >>> EIGEN3 version?
>>> >>
>>> >> A beta is a pre-release version and hence counts as before 3.3.0!
>>> >>
>>> >> Try to update your version!
>>> >>
>>> >> Christoph
>>> >>>
>>> >>>
>>> >>> Would appreciate any help and hint
>>> >>>
>>> >>> Thanks
>>> >>>
>>> >>> --
>>> >>> You received this message because you are subscribed to the Google
>>> >>> Groups
>>> >>> "votca" group.
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>>> >>> an
>>> >>> email to [email protected].
>>> >>> To post to this group, send email to [email protected].
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>>> >>> For more options, visit https://groups.google.com/d/optout.
>>> >>
>>> >> --
>>> >> Christoph Junghans
>>> >> Web: http://www.compphys.de
>>> >>
>>> >> --
>>> >> You received this message because you are subscribed to a topic in the
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>>> >> To unsubscribe from this group and all its topics, send an email to
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>>> >> For more options, visit https://groups.google.com/d/optout.
>>> >
>>> >
>>> > --
>>> > You received this message because you are subscribed to the Google Groups
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>>> > To unsubscribe from this group and stop receiving emails from it, send an
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>>> > To post to this group, send email to [email protected].
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>>> > For more options, visit https://groups.google.com/d/optout.
>>>
>>>
>>>
>>> --
>>> Christoph Junghans
>>> Web: http://www.compphys.de
>
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--
Christoph Junghans
Web: http://www.compphys.de
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