Hello everybody,
I am trying to install votca version 1.6.2 in a supercomputer. After
succesffully configure using the following modules:
intel/19.1.1
impi/2019.7
mkl/2020.1
gromacs/2019.4
libxc/4.3.4
doxygen/1.8
cmake/3.15 (version 3.13 incompatible with doxygen 1.8)
clang/10.0
hdf5-serial/1.8.21
fftw-serial/3.3.8
boost/1.73
with gcc version 9.3.0
and
cmake -Bbuilddir -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON
-DGROMACS_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/include/
-DGROMACS_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/lib64/libgromacs.a
-DLIBXC_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_10-10.2.0/4.3.4/
-DLIBXC_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_10-10.2.0/4.3.4/lib/libxc.a
-DCMAKE_INSTALL_PREFIX=${prefix} ../votca
However when I try to run
cmake --build builddir
I got the following:
Current git revision is 9b6bbd0
[ 0%] Built target gitversion-xtp
Current git revision is 9b6bbd0
[ 0%] Built target gitversion
[ 0%] Building CXX object
tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o
In file included from
/u/forero/src/votca/tools/include/votca/tools/property.h:23:0,
from
/u/forero/src/votca/tools/include/votca/tools/application.h:21,
from
/u/forero/src/votca/tools/src/libtools/application.cc:19:
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:107:3: error:
‘unique_ptr’ in namespace ‘std’ does not name a type
std::unique_ptr<boost::tokenizer<boost::char_separator<char>>> tok;
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In constructor
‘votca::tools::Tokenizer::Tokenizer(const string&, const char*)’:
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:5: error:
‘tok’ was not declared in this scope
tok =
std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str,
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:11: error:
‘make_unique’ is not a member of ‘std’
tok =
std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str,
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:73: error:
expected primary-expression before ‘>’ token
tok =
std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str,
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:51:75: warning:
left operand of comma operator has no effect [-Wunused-value]
sep);
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In member
function ‘votca::tools::Tokenizer::iterator
votca::tools::Tokenizer::begin()’:
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:60:29: error:
‘tok’ was not declared in this scope
iterator begin() { return tok->begin(); }
^
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In member
function ‘votca::tools::Tokenizer::iterator votca::tools::Tokenizer::end()’:
/u/forero/src/votca/tools/include/votca/tools/tokenizer.h:65:27: error:
‘tok’ was not declared in this scope
iterator end() { return tok->end(); }
^
In file included from
/u/forero/src/votca/tools/include/votca/tools/application.h:21:0,
from
/u/forero/src/votca/tools/src/libtools/application.cc:19:
/u/forero/src/votca/tools/include/votca/tools/property.h: In constructor
‘votca::tools::Property::Property(const string&, const string&, const
string&)’:
/u/forero/src/votca/tools/include/votca/tools/property.h:59:7: warning:
declaration of ‘path’ shadows a member of 'this' [-Wshadow]
: _name(name), _value(value), _path(path) {}
^
/u/forero/src/votca/tools/include/votca/tools/property.h:59:7: warning:
declaration of ‘value’ shadows a member of 'this' [-Wshadow]
/u/forero/src/votca/tools/include/votca/tools/property.h:59:7: warning:
declaration of ‘name’ shadows a member of 'this' [-Wshadow]
/u/forero/src/votca/tools/include/votca/tools/property.h: In member
function ‘votca::tools::Property& votca::tools::Property::set(const
string&, const string&)’:
/u/forero/src/votca/tools/include/votca/tools/property.h:248:56: warning:
declaration of ‘value’ shadows a member of 'this' [-Wshadow]
const std::string &value) {
^
/u/forero/src/votca/tools/include/votca/tools/property.h: In member
function ‘votca::tools::Property& votca::tools::Property::add(const
string&, const string&)’:
/u/forero/src/votca/tools/include/votca/tools/property.h:255:56: warning:
declaration of ‘value’ shadows a member of 'this' [-Wshadow]
const std::string &value) {
^
/u/forero/src/votca/tools/include/votca/tools/property.h:256:15: warning:
declaration of ‘path’ shadows a member of 'this' [-Wshadow]
std::string path = _path;
^
/u/forero/src/votca/tools/include/votca/tools/property.h: In member
function ‘void votca::tools::Property::setAttribute(const string&, const
T&)’:
/u/forero/src/votca/tools/include/votca/tools/property.h:420:50: warning:
declaration of ‘value’ shadows a member of 'this' [-Wshadow]
const T &value) {
^
tools/src/libtools/CMakeFiles/votca_tools.dir/build.make:75: recipe for
target 'tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o'
failed
gmake[2]: ***
[tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1
CMakeFiles/Makefile2:256: recipe for target
'tools/src/libtools/CMakeFiles/votca_tools.dir/all' failed
gmake[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
Makefile:129: recipe for target 'all' failed
gmake: *** [all] Error 2
Does anyone have an idea of what might be the problem. I tried different
combinations of the gcc version and the boost without success.
Best regards,
Nancy
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