Thanks Christoph, I have added -DBUILD_SHARED_LIBS=OFF -DBUILD_CSGAPPS=ON -DBUILD_XTP=OFF, since I want to use the gromacs in the supercomputer. Now the output error for
cmake --build builddir occurs when linking CXX executable votca_property here the last lines: (whole --verbose output attached) ... cESaIcEEESA_ERKSA_EE[_ZN5boost15program_options25basic_command_line_parserIcE12extra_parserENS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_ERKSA_EE]+0x3e): undefined reference to `boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': application.cc:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x1b8): undefined reference to `boost::program_options::to_internal(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' /usr/bin/ld: application.cc:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x277): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)' collect2: error: ld returned 1 exit status tools/src/tools/CMakeFiles/votca_property.dir/build.make:89: recipe for target 'tools/src/tools/votca_property' failed gmake[2]: *** [tools/src/tools/votca_property] Error 1 CMakeFiles/Makefile2:317: recipe for target 'tools/src/tools/CMakeFiles/votca_property.dir/all' failed gmake[1]: *** [tools/src/tools/CMakeFiles/votca_property.dir/all] Error 2 Makefile:129: recipe for target 'all' failed gmake: *** [all] Error 2 Cheers, Nancy On Saturday, 19 December 2020 at 16:22:11 UTC+1 Christoph Junghans wrote: > On Sat, Dec 19, 2020 at 8:05 AM nancyfor <[email protected]> wrote: > > > > Hi Christoph, > > > > I am using the following command, > > > > cmake -Bbuilddir -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ > -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON > -DGROMACS_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/include/ > > -DGROMACS_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/lib64/libgromacs.a > > -DLIBXC_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_8-8.4.0/4.3.4/include/ > > -DLIBXC_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_8-8.4.0/4.3.4/lib/libxc.a > > -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON -DCMAKE_INSTALL_PREFIX=${prefix} > ../votca > > > > and the configuration show no problems. But when building it, I have a > problem with the linking of the libraries for gromacs, which are in this > cases static, there is not .so libraries available. > > > > Below is the last part of the output of > > cmake --build builddir --verbose > > > > I have attached the complete output in: > output_verbose_votca_19_12_2020.txt > > > > I tried to pass the -fPIC option when compiling but I think I am doing > it wrong. How this should be done? > > > > Best regards, > > Nancy > > > > ... > > /usr/bin/ld: > /mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/lib64/libgromacs.a(merge_sort.c.o): > > relocation R_X86_64_PC32 against symbol `memcpy@@GLIBC_2.14' can not be > used when making a shared object; recompile with -fPIC > > /usr/bin/ld: final link failed: nonrepresentable section on output > > collect2: error: ld returned 1 exit status > > csg/src/libcsg/CMakeFiles/votca_csg.dir/build.make:798: recipe for > target 'csg/src/libcsg/libvotca_csg.so.6' failed > > gmake[2]: *** [csg/src/libcsg/libvotca_csg.so.6] Error 1 > > gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' > > CMakeFiles/Makefile2:590: recipe for target > 'csg/src/libcsg/CMakeFiles/votca_csg.dir/all' failed > > gmake[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 > > gmake[1]: Leaving directory '/cobra/u/forero/src/votca/builddir' > > Makefile:129: recipe for target 'all' failed > > gmake: *** [all] Error 2 > This error just means you cannot mix shared (.so) and static (.a) > libraries. > > You have three options: > - rebuild gromacs shared: using -DBUILD_SHARED_LIBS=ON when you build > gromacs > - have VOTCA builds its own gromacs: -DBUILD_OWN_GROMACS=ON when building > votca > - build VOTCA with static libs: -DBUILD_SHARED_LIBS=OFF when building votca > > I see libxc is static, too, so you will have the same issue later when > building votca xtp. > Options here: > - rebuild libxc shared: using --enable-shared when building libxc > - build VOTCA with static libs: -DBUILD_SHARED_LIBS=OFF when building votca > - don't build the xtp module (not sure if you need it): > -DBUILD_XTP=OFF when building votca > > Alternatively, you could use spack to install everything, see > https://github.com/votca/votca/blob/master/share/doc/INSTALL.rst#spack > > Christoph > > > > On Tuesday, 1 December 2020 at 15:20:46 UTC+1 nancyfor wrote: > >> > >> I think the issue with MKL is related to the gcc version, there is not > module of MKL for gcc-8. > >> When I succed, I will let you know. > >> Thank you! > >> Cheers > >> Nancy > >> > >> On Tuesday, 1 December 2020 at 15:15:11 UTC+1 Christoph Junghans wrote: > >>> > >>> On Tue, Dec 1, 2020 at 7:11 AM nancyfor <[email protected]> wrote: > >>> > > >>> > Hi Christoph > >>> > Few minutes ago I was using, > >>> > > >>> > -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ > >>> > > >>> > and correctly use GNU 8.4.0 > >>> > > >>> > However, now there is something related to the > 'MKL_ThreadingLibrary_LINK_LIBRARY-NOTFOUND' > >>> Try to compile without MKL for now: > >>> -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON, if you aren't using xtp, mkl > >>> doesn't gain you much anyhow. > >>> > >>> Christoph > >>> > >>> > > >>> > this is the output for cmake --build builddir > >>> > > >>> > Scanning dependencies of target gitversion-xtp > >>> > Current git revision is 9b6bbd0 > >>> > [ 0%] Built target gitversion-xtp > >>> > Scanning dependencies of target gitversion > >>> > Current git revision is 9b6bbd0 > >>> > [ 0%] Built target gitversion > >>> > Scanning dependencies of target votca_tools > >>> > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > >>> > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > >>> > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o > >>> > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o > >>> > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o > >>> > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > >>> > [ 3%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o > >>> > [ 3%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o > >>> > [ 3%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o > >>> > [ 4%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o > >>> > [ 4%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/elements.cc.o > >>> > [ 4%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o > >>> > [ 5%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o > >>> > [ 5%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o > >>> > [ 5%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o > >>> > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o > >>> > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o > >>> > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o > >>> > [ 7%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o > >>> > [ 7%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o > >>> > [ 8%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o > >>> > [ 8%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o > >>> > [ 8%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o > >>> > [ 9%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o > >>> > [ 9%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o > >>> > [ 9%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o > >>> > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o > >>> > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o > >>> > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o > >>> > [ 11%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o > >>> > [ 11%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o > >>> > [ 11%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o > >>> > [ 12%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o > >>> > [ 12%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o > >>> > [ 12%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o > >>> > [ 13%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o > >>> > gmake[2]: *** No rule to make target > 'MKL_ThreadingLibrary_LINK_LIBRARY-NOTFOUND', needed by > 'tools/src/libtools/libvotca_tools.so.6'. Stop. > >>> > CMakeFiles/Makefile2:256: recipe for target > 'tools/src/libtools/CMakeFiles/votca_tools.dir/all' failed > >>> > gmake[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] > Error 2 > >>> > Makefile:129: recipe for target 'all' failed > >>> > gmake: *** [all] Error 2 > >>> > > >>> > I have attached the output for cmake --build builddir --verbose > >>> > > >>> > Thanks > >>> > Nancy > >>> > > >>> > On Tuesday, 1 December 2020 at 14:46:11 UTC+1 Christoph Junghans > wrote: > >>> >> > >>> >> On Tue, Dec 1, 2020 at 3:00 AM nancyfor <[email protected]> wrote: > >>> >> > > >>> >> > Hi Christoph, > >>> >> > > >>> >> > I thought I was using gcc. I did not change anything on purpose. > So, to be a little bit more consistent, I checked again the gcc and the > boost version that worked together, and include the flag > -DCMAKE_CXX_COMPILER_ID=GNU (is this alright?) Currently I have the > following modules uploaded: > >>> >> > > >>> >> > mkl/2020.1 > >>> >> > gromacs/2019.4 > >>> >> > doxygen/1.8 > >>> >> > cmake/3.15 > >>> >> > clang/10.0 > >>> >> > gcc/8 > >>> >> > boost/1.66 > >>> >> > libxc/4.3.4 > >>> >> > fftw-serial/3.3.8 > >>> >> > hdf5-serial/1.8.21 > >>> >> > > >>> >> > Un run the following with the new library paths (I have attached > the CMakeOutput.log and the output from "cmake -Bbuilddir ../votca" > output_cmake_Bbuildir.txt) > >>> >> > > >>> >> > cmake -Bbuilddir -DCMAKE_CXX_COMPILER_ID=GNU -DBUILD_CSGAPPS=ON > -DBUILD_XTP=ON > -DGROMACS_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/include/ > > -DGROMACS_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/lib64/libgromacs.a > > -DLIBXC_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_8-8.4.0/4.3.4/include/ > > -DLIBXC_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_8-8.4.0/4.3.4/lib/libxc.a > > -DCMAKE_INSTALL_PREFIX=${prefix} ../votca > >>> >> > > >>> >> > and again when doing > >>> >> > cmake --build builddir --verbose > >>> >> > I get an error, different from the origina one I mentioned. The > full output is in cmake_verbose.txt > >>> >> Thanks, the cmake log says: > >>> >> > >>> >> The C compiler identification is GNU 4.8.5 > >>> >> > >>> >> GCC 4.8.5 is unfortunately too old as it misses some C++-11 > features, > >>> >> you mentioned a "gcc/8" in your first email, maybe you can try to > use > >>> >> that one instead. I guess something like > "-DCMAKE_CXX_COMPILER=g++-8" > >>> >> > >>> >> Christoph > >>> >> > >>> >> > >>> >> > > >>> >> > Thanks > >>> >> > Nancy > >>> >> > On Monday, 30 November 2020 at 17:08:19 UTC+1 Christoph Junghans > wrote: > >>> >> >> > >>> >> >> Nancy, > >>> >> >> > >>> >> >> Are you trying to compile with gcc or icc? > >>> >> >> > >>> >> >> Could you attach the full output of "cmake -Bbuilddir ../votca" > and > >>> >> >> "cmake --build builddir --verbose" (mind the extra "--verbose" > here)? > >>> >> >> > >>> >> >> Thanks, > >>> >> >> > >>> >> >> Christoph > >>> >> >> > >>> >> >> On Mon, Nov 30, 2020 at 8:18 AM nancyfor <[email protected]> > wrote: > >>> >> >> > > >>> >> >> > Hello everybody, > >>> >> >> > > >>> >> >> > I am trying to install votca version 1.6.2 in a supercomputer. > After succesffully configure using the following modules: > >>> >> >> > > >>> >> >> > intel/19.1.1 > >>> >> >> > impi/2019.7 > >>> >> >> > mkl/2020.1 > >>> >> >> > gromacs/2019.4 > >>> >> >> > libxc/4.3.4 > >>> >> >> > doxygen/1.8 > >>> >> >> > cmake/3.15 (version 3.13 incompatible with doxygen 1.8) > >>> >> >> > clang/10.0 > >>> >> >> > hdf5-serial/1.8.21 > >>> >> >> > fftw-serial/3.3.8 > >>> >> >> > boost/1.73 > >>> >> >> > with gcc version 9.3.0 > >>> >> >> > > >>> >> >> > and > >>> >> >> > > >>> >> >> > cmake -Bbuilddir -DBUILD_CSGAPPS=ON -DBUILD_XTP=ON > -DGROMACS_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/include/ > > -DGROMACS_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/gromacs/gcc_8-8.4.0-impi_2019.7-2019.7.217/2019.4/lib64/libgromacs.a > > -DLIBXC_INCLUDE_DIR=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_10-10.2.0/4.3.4/ > > -DLIBXC_LIBRARY=/mpcdf/soft/SLE_12/packages/skylake/libxc/gcc_10-10.2.0/4.3.4/lib/libxc.a > > -DCMAKE_INSTALL_PREFIX=${prefix} ../votca > >>> >> >> > > >>> >> >> > However when I try to run > >>> >> >> > > >>> >> >> > cmake --build builddir > >>> >> >> > > >>> >> >> > I got the following: > >>> >> >> > > >>> >> >> > Current git revision is 9b6bbd0 > >>> >> >> > [ 0%] Built target gitversion-xtp > >>> >> >> > Current git revision is 9b6bbd0 > >>> >> >> > [ 0%] Built target gitversion > >>> >> >> > [ 0%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > >>> >> >> > In file included from > /u/forero/src/votca/tools/include/votca/tools/property.h:23:0, > >>> >> >> > from > /u/forero/src/votca/tools/include/votca/tools/application.h:21, > >>> >> >> > from /u/forero/src/votca/tools/src/libtools/application.cc:19: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:107:3: error: > ‘unique_ptr’ in namespace ‘std’ does not name a type > >>> >> >> > std::unique_ptr<boost::tokenizer<boost::char_separator<char>>> > tok; > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In > constructor ‘votca::tools::Tokenizer::Tokenizer(const string&, const > char*)’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:5: error: > ‘tok’ was not declared in this scope > >>> >> >> > tok = > std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, > >>> >> >> > ^ > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:11: error: > ‘make_unique’ is not a member of ‘std’ > >>> >> >> > tok = > std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, > >>> >> >> > ^ > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:50:73: error: > expected primary-expression before ‘>’ token > >>> >> >> > tok = > std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, > >>> >> >> > ^ > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:51:75: warning: > left operand of comma operator has no effect [-Wunused-value] > >>> >> >> > sep); > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In > member function ‘votca::tools::Tokenizer::iterator > votca::tools::Tokenizer::begin()’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:60:29: error: > ‘tok’ was not declared in this scope > >>> >> >> > iterator begin() { return tok->begin(); } > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h: In > member function ‘votca::tools::Tokenizer::iterator > votca::tools::Tokenizer::end()’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/tokenizer.h:65:27: error: > ‘tok’ was not declared in this scope > >>> >> >> > iterator end() { return tok->end(); } > >>> >> >> > ^ > >>> >> >> > In file included from > /u/forero/src/votca/tools/include/votca/tools/application.h:21:0, > >>> >> >> > from /u/forero/src/votca/tools/src/libtools/application.cc:19: > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h: In > constructor ‘votca::tools::Property::Property(const string&, const string&, > const string&)’: > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘path’ shadows a member of 'this' [-Wshadow] > >>> >> >> > : _name(name), _value(value), _path(path) {} > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘name’ shadows a member of 'this' [-Wshadow] > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h: In > member function ‘votca::tools::Property& votca::tools::Property::set(const > string&, const string&)’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/property.h:248:56: warning: > declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >>> >> >> > const std::string &value) { > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h: In > member function ‘votca::tools::Property& votca::tools::Property::add(const > string&, const string&)’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/property.h:255:56: warning: > declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >>> >> >> > const std::string &value) { > >>> >> >> > ^ > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/property.h:256:15: warning: > declaration of ‘path’ shadows a member of 'this' [-Wshadow] > >>> >> >> > std::string path = _path; > >>> >> >> > ^ > >>> >> >> > /u/forero/src/votca/tools/include/votca/tools/property.h: In > member function ‘void votca::tools::Property::setAttribute(const string&, > const T&)’: > >>> >> >> > > /u/forero/src/votca/tools/include/votca/tools/property.h:420:50: warning: > declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >>> >> >> > const T &value) { > >>> >> >> > ^ > >>> >> >> > tools/src/libtools/CMakeFiles/votca_tools.dir/build.make:75: > recipe for target > 'tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o' failed > >>> >> >> > gmake[2]: *** > [tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1 > >>> >> >> > CMakeFiles/Makefile2:256: recipe for target > 'tools/src/libtools/CMakeFiles/votca_tools.dir/all' failed > >>> >> >> > gmake[1]: *** > [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2 > >>> >> >> > Makefile:129: recipe for target 'all' failed > >>> >> >> > gmake: *** [all] Error 2 > >>> >> >> > > >>> >> >> > Does anyone have an idea of what might be the problem. I tried > different combinations of the gcc version and the boost without success. > >>> >> >> > > >>> >> >> > Best regards, > >>> >> >> > Nancy > >>> >> >> > > >>> >> >> > > >>> >> >> > > >>> >> >> > > >>> >> >> > > >>> >> >> > > >>> >> >> > > >>> >> >> > -- > >>> >> >> > Join us on Slack: https://join.slack.com/t/votca/signup > >>> >> >> > --- > >>> >> >> > You received this message because you are subscribed to the > Google Groups "votca" group. > >>> >> >> > To unsubscribe from this group and stop receiving emails from > it, send an email to [email protected]. > >>> >> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/41e71c8f-bef2-4df9-85ae-dcdc81474176n%40googlegroups.com > . > >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> -- > >>> >> >> Christoph Junghans > >>> >> >> Web: http://www.compphys.de > >>> >> > > >>> >> > -- > >>> >> > Join us on Slack: https://join.slack.com/t/votca/signup > >>> >> > --- > >>> >> > You received this message because you are subscribed to the > Google Groups "votca" group. > >>> >> > To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >>> >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/27db68be-a714-4e69-92e0-a990dc90014en%40googlegroups.com > . > >>> >> > >>> >> > >>> >> > >>> >> -- > >>> >> Christoph Junghans > >>> >> Web: http://www.compphys.de > >>> > > >>> > -- > >>> > Join us on Slack: https://join.slack.com/t/votca/signup > >>> > --- > >>> > You received this message because you are subscribed to the Google > Groups "votca" group. > >>> > To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >>> > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/6815a3c7-fefc-4d92-b3f5-7703a3e8cbc4n%40googlegroups.com > . > >>> > >>> > >>> > >>> -- > >>> Christoph Junghans > >>> Web: http://www.compphys.de > > > > -- > > Join us on Slack: https://join.slack.com/t/votca/signup > > --- > > You received this message because you are subscribed to the Google > Groups "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/61130d5f-ea2c-4326-9e05-c9ee9186863bn%40googlegroups.com > . > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/votca/f12d1177-3ac0-493c-b40b-0561c51aa00bn%40googlegroups.com.
/u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -S/u/forero/src/votca -B/u/forero/src/votca/builddir --check-build-system CMakeFiles/Makefile.cmake 0 /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_progress_start /u/forero/src/votca/builddir/CMakeFiles /u/forero/src/votca/builddir/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/cobra/u/forero/src/votca/builddir' /usr/bin/gmake -f tools/share/man/CMakeFiles/votca_tools_manpages.dir/build.make tools/share/man/CMakeFiles/votca_tools_manpages.dir/depend gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' cd /u/forero/src/votca/builddir && /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_depends "Unix Makefiles" /u/forero/src/votca /u/forero/src/votca/tools/share/man /u/forero/src/votca/builddir /u/forero/src/votca/builddir/tools/share/man /u/forero/src/votca/builddir/tools/share/man/CMakeFiles/votca_tools_manpages.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' /usr/bin/gmake -f tools/share/man/CMakeFiles/votca_tools_manpages.dir/build.make tools/share/man/CMakeFiles/votca_tools_manpages.dir/build gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' gmake[2]: Nothing to be done for 'tools/share/man/CMakeFiles/votca_tools_manpages.dir/build'. gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' [ 0%] Built target votca_tools_manpages /usr/bin/gmake -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/depend gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' cd /u/forero/src/votca/builddir && /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_depends "Unix Makefiles" /u/forero/src/votca /u/forero/src/votca/tools/src/libtools /u/forero/src/votca/builddir /u/forero/src/votca/builddir/tools/src/libtools /u/forero/src/votca/builddir/tools/src/libtools/CMakeFiles/gitversion.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' /usr/bin/gmake -f tools/src/libtools/CMakeFiles/gitversion.dir/build.make tools/src/libtools/CMakeFiles/gitversion.dir/build gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' cd /u/forero/src/votca/builddir/tools/src/libtools && /cobra/u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -DTOP_SOURCE_DIR="/u/forero/src/votca" -DGIT_EXECUTABLE="/usr/bin/git" -P /u/forero/src/votca/tools/CMakeModules/gitversion.cmake Current git revision is 9b6bbd0 gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' [ 0%] Built target gitversion /usr/bin/gmake -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/depend gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' cd /u/forero/src/votca/builddir && /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_depends "Unix Makefiles" /u/forero/src/votca /u/forero/src/votca/tools/src/libtools /u/forero/src/votca/builddir /u/forero/src/votca/builddir/tools/src/libtools /u/forero/src/votca/builddir/tools/src/libtools/CMakeFiles/votca_tools.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' /usr/bin/gmake -f tools/src/libtools/CMakeFiles/votca_tools.dir/build.make tools/src/libtools/CMakeFiles/votca_tools.dir/build gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' gmake[2]: Nothing to be done for 'tools/src/libtools/CMakeFiles/votca_tools.dir/build'. gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' [ 27%] Built target votca_tools /usr/bin/gmake -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/depend gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' cd /u/forero/src/votca/builddir && /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_depends "Unix Makefiles" /u/forero/src/votca /u/forero/src/votca/tools/src/tools /u/forero/src/votca/builddir /u/forero/src/votca/builddir/tools/src/tools /u/forero/src/votca/builddir/tools/src/tools/CMakeFiles/votca_property.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' /usr/bin/gmake -f tools/src/tools/CMakeFiles/votca_property.dir/build.make tools/src/tools/CMakeFiles/votca_property.dir/build gmake[2]: Entering directory '/cobra/u/forero/src/votca/builddir' [ 28%] Linking CXX executable votca_property cd /u/forero/src/votca/builddir/tools/src/tools && /u/system/soft/SLE_12/packages/x86_64/cmake/3.15.2/bin/cmake -E cmake_link_script CMakeFiles/votca_property.dir/link.txt --verbose=1 /mpcdf/soft/SLE_12/packages/x86_64/gcc/8.4.0/bin/g++ -Wall -Wextra -Wpedantic -Wshadow -Wconversion -O3 -DNDEBUG CMakeFiles/votca_property.dir/votca_property.cc.o -o votca_property -Wl,-rpath,/mpcdf/soft/SLE_12/packages/skylake/boost/intel_19.1.1-19.1.1-impi_2019.7-2019.7.217/1.66.0/lib:/mpcdf/soft/SLE_12/packages/skylake/fftw/gcc_8-8.4.0/3.3.8/lib: ../libtools/libvotca_tools.a /mpcdf/soft/SLE_12/packages/skylake/boost/intel_19.1.1-19.1.1-impi_2019.7-2019.7.217/1.66.0/lib/libboost_program_options.so /mpcdf/soft/SLE_12/packages/skylake/boost/intel_19.1.1-19.1.1-impi_2019.7-2019.7.217/1.66.0/lib/libboost_filesystem.so /mpcdf/soft/SLE_12/packages/skylake/boost/intel_19.1.1-19.1.1-impi_2019.7-2019.7.217/1.66.0/lib/libboost_system.so /usr/lib64/libexpat.so -lpthread -lm /mpcdf/soft/SLE_12/packages/skylake/fftw/gcc_8-8.4.0/3.3.8/lib/libfftw3.so /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const': votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x23): undefined reference to `boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::name() const': votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv]+0x1f): undefined reference to `boost::program_options::arg[abi:cxx11]' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `boost::program_options::typed_value<long, char>::name[abi:cxx11]() const': votca_property.cc:(.text._ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev]+0x1f): undefined reference to `boost::program_options::arg[abi:cxx11]' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)': votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x1f): undefined reference to `boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)' /usr/bin/ld: votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x33): undefined reference to `boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `VotcaProperty::Run()': votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x4a): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x11b): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x1d8): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o: in function `void boost::program_options::validate<long, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, long*, long) [clone .constprop.186]': votca_property.cc:(.text._ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l.constprop.186[_ZNK5boost15program_options11typed_valueIlcE6xparseERNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISB_EE]+0x607): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): more undefined references to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const' follow /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' /usr/bin/ld: CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueIlcEE[_ZTVN5boost15program_options11typed_valueIlcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `votca::tools::Application::AddProgramOptions(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)': application.cc:(.text+0x691): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `votca::tools::Application::ShowTEXPage(std::ostream&)': application.cc:(.text+0x1753): undefined reference to `boost::program_options::option_description::format_parameter[abi:cxx11]() const' /usr/bin/ld: application.cc:(.text+0x1762): undefined reference to `boost::program_options::option_description::format_name[abi:cxx11]() const' /usr/bin/ld: application.cc:(.text+0x1985): undefined reference to `boost::program_options::option_description::description[abi:cxx11]() const' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `votca::tools::Application::ShowManPage(std::ostream&)': application.cc:(.text+0x1f7e): undefined reference to `boost::program_options::option_description::format_parameter[abi:cxx11]() const' /usr/bin/ld: application.cc:(.text+0x1f8d): undefined reference to `boost::program_options::option_description::format_name[abi:cxx11]() const' /usr/bin/ld: application.cc:(.text+0x218d): undefined reference to `boost::program_options::option_description::description[abi:cxx11]() const' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `votca::tools::Application::Application()': application.cc:(.text+0x2cde): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `boost::program_options::basic_command_line_parser<char>::extra_parser(boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)': application.cc:(.text._ZN5boost15program_options25basic_command_line_parserIcE12extra_parserENS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_ERKSA_EE[_ZN5boost15program_options25basic_command_line_parserIcE12extra_parserENS_9function1ISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_ERKSA_EE]+0x3e): undefined reference to `boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>)' /usr/bin/ld: ../libtools/libvotca_tools.a(application.cc.o): in function `boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)': application.cc:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x1b8): undefined reference to `boost::program_options::to_internal(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' /usr/bin/ld: application.cc:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x277): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)' collect2: error: ld returned 1 exit status tools/src/tools/CMakeFiles/votca_property.dir/build.make:89: recipe for target 'tools/src/tools/votca_property' failed gmake[2]: *** [tools/src/tools/votca_property] Error 1 gmake[2]: Leaving directory '/cobra/u/forero/src/votca/builddir' CMakeFiles/Makefile2:317: recipe for target 'tools/src/tools/CMakeFiles/votca_property.dir/all' failed gmake[1]: *** [tools/src/tools/CMakeFiles/votca_property.dir/all] Error 2 gmake[1]: Leaving directory '/cobra/u/forero/src/votca/builddir' Makefile:129: recipe for target 'all' failed gmake: *** [all] Error 2
