On Sun, Apr 23, 2023 at 11:26 PM zongyun tsai <[email protected]> wrote: > > Dear Christoph > > > (base) glenntsai@GlenndeAir ~ % cmake --build builddir --parallel 8 > > [ 1%] Built target csg_inverse_manpage > > [ 2%] Built target csg_call_build > > [ 2%] Built target csg_call_manpage > > [ 2%] Built target csg_inverse_build > > [ 2%] Built target votca_tools_manpages > > [ 2%] Built target votca_csg_manpages > > Current git revision is b533e3901 > > [ 2%] Built target gitversion > > [ 17%] Built target votca_tools > > [ 17%] Built target votca_property > > [ 17%] Built target unit_test_correlate > > [ 17%] Built target unit_test_cubicspline > > [ 19%] Built target unit_test_datacollection > > [ 19%] Built target unit_test_crosscorrelate > > [ 19%] Built target unit_test_calculator > > [ 20%] Built target unit_test_constants > > [ 20%] Built target unit_test_edge_base > > [ 22%] Built target unit_test_floatingpointcomparison > > [ 22%] Built target unit_test_filesystem > > [ 23%] Built target unit_test_elements > > [ 25%] Built target unit_test_graphalgorithm > > [ 26%] Built target unit_test_edgecontainer > > [ 26%] Built target unit_test_graph_base > > [ 26%] Built target unit_test_graphdistvisitor > > [ 26%] Built target unit_test_graph_df_visitor > > [ 26%] Built target unit_test_graphvisitor > > [ 28%] Built target unit_test_histogramnew > > [ 29%] Built target unit_test_graph_bf_visitor > > [ 31%] Built target unit_test_graphnode > > [ 31%] Built target unit_test_identity > > [ 31%] Built target unit_test_name > > [ 32%] Built target unit_test_objectfactory > > [ 34%] Built target unit_test_property > > [ 34%] Built target unit_test_linalg > > [ 34%] Built target unit_test_optionshandler > > [ 35%] Built target unit_test_reducededge > > [ 35%] Built target unit_test_reducedgraph > > [ 37%] Built target unit_test_structureparameters > > [ 37%] Built target unit_test_thread > > [ 38%] Built target unit_test_tokenizer > > [ 38%] Built target unit_test_table > > [ 38%] Built target unit_test_random > > [ 40%] Built target unit_test_akimaspline > > [ 41%] Built target unit_test_linspline > > [ 43%] Built target unit_test_unitconverter > > [ 43%] Built target votca_property_manpage > > [ 43%] Built target unit_test_NDimVector > > [ 43%] Built target unit_test_eigenio_matrixmarket > > [ 43%] Linking CXX shared library libvotca_csg.dylib > > Undefined symbols for architecture arm64: > > "read_first_frame(gmx_output_env_t const*, t_trxstatus**, > std::__1::__fs::filesystem::path const&, t_trxframe*, int)", referenced from: Hmm, this means something is wrong with the linking against gromacs?
0.) Do you need gromacs at all? - Otherwise switch it off. 1.) What gromacs version are you using? 2.) Did you build gromacs yourself? Christoph > > votca::csg::GMXTrajectoryReader::FirstFrame(votca::csg::Topology&) in > gmxtrajectoryreader.cc.o > > "open_trx(std::__1::__fs::filesystem::path const&, char const*)", > referenced from: > > votca::csg::GMXTrajectoryWriter::Open(std::__1::basic_string<char, > std::__1::char_traits<char>, std::__1::allocator<char> >, bool) in > gmxtrajectorywriter.cc.o > > "read_tpx(std::__1::__fs::filesystem::path const&, t_inputrec*, float (*) > [3], int*, float (*) [3], float (*) [3], gmx_mtop_t*)", referenced from: > > > votca::csg::GMXTopologyReader::ReadTopology(std::__1::basic_string<char, > std::__1::char_traits<char>, std::__1::allocator<char> >, > votca::csg::Topology&) in gmxtopologyreader.cc.o > > ld: symbol(s) not found for architecture arm64 > > clang: error: linker command failed with exit code 1 (use -v to see > invocation) > > make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 > > make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 > > make: *** [all] Error 2 > > > > Glenn > > > Christoph Junghans 在 2023年4月24日 星期一上午11:51:51 [UTC+8] 的信中寫道： >> >> On Sun, Apr 23, 2023 at 19:38 zongyun tsai <[email protected]> wrote: >>> >>> Hello, >>> I encountered an Error message while when running the following command: >>> cmake --build builddirThe error shown in the terminal states that >>> >>> clang: error: linker command failed with exit code 1 (use -v to see >>> invocation) >> >> can you post the lines above this error? >> >> Christoph >>> >>> make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 >>> >>> make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 >>> >>> make: *** [all] Error 2 >>> >>> Can you please suggest some ways to correct this error? >>> Thank you,Glenn >>> >>> >>> >>> >>> -- >>> Join us on Slack: https://join.slack.com/t/votca/signup >>> --- >>> You received this message because you are subscribed to the Google Groups >>> "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/60a4e6f3-51d2-49a2-ad60-5b6df3d064d2n%40googlegroups.com. >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de > > -- > Join us on Slack: https://join.slack.com/t/votca/signup > --- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/3db772b3-1c44-4dad-ae1c-edea78357445n%40googlegroups.com. -- Christoph Junghans Web: http://www.compphys.de -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/votca/CAHG27e6W3TARHB87oZD%2BfD2rR7bZKhmoxAdO%3DJQmt7%2Bv0ubFag%40mail.gmail.com.
