On Tue, Apr 25, 2023 at 00:47 zongyun tsai <[email protected]> wrote:
> Dear Christoph, > > My gromacs version is 2023.1, and was built by myself using homebrew. > Can you do a verbose build (add —verbose) and post the error message and lines above again? Christoph > Glenn > > Christoph Junghans 在 2023年4月24日 星期一晚上11:40:24 [UTC+8] 的信中寫道： > >> On Sun, Apr 23, 2023 at 11:26 PM zongyun tsai <[email protected]> >> wrote: >> > >> > Dear Christoph >> > >> > >> > (base) glenntsai@GlenndeAir ~ % cmake --build builddir --parallel 8 >> > >> > [ 1%] Built target csg_inverse_manpage >> > >> > [ 2%] Built target csg_call_build >> > >> > [ 2%] Built target csg_call_manpage >> > >> > [ 2%] Built target csg_inverse_build >> > >> > [ 2%] Built target votca_tools_manpages >> > >> > [ 2%] Built target votca_csg_manpages >> > >> > Current git revision is b533e3901 >> > >> > [ 2%] Built target gitversion >> > >> > [ 17%] Built target votca_tools >> > >> > [ 17%] Built target votca_property >> > >> > [ 17%] Built target unit_test_correlate >> > >> > [ 17%] Built target unit_test_cubicspline >> > >> > [ 19%] Built target unit_test_datacollection >> > >> > [ 19%] Built target unit_test_crosscorrelate >> > >> > [ 19%] Built target unit_test_calculator >> > >> > [ 20%] Built target unit_test_constants >> > >> > [ 20%] Built target unit_test_edge_base >> > >> > [ 22%] Built target unit_test_floatingpointcomparison >> > >> > [ 22%] Built target unit_test_filesystem >> > >> > [ 23%] Built target unit_test_elements >> > >> > [ 25%] Built target unit_test_graphalgorithm >> > >> > [ 26%] Built target unit_test_edgecontainer >> > >> > [ 26%] Built target unit_test_graph_base >> > >> > [ 26%] Built target unit_test_graphdistvisitor >> > >> > [ 26%] Built target unit_test_graph_df_visitor >> > >> > [ 26%] Built target unit_test_graphvisitor >> > >> > [ 28%] Built target unit_test_histogramnew >> > >> > [ 29%] Built target unit_test_graph_bf_visitor >> > >> > [ 31%] Built target unit_test_graphnode >> > >> > [ 31%] Built target unit_test_identity >> > >> > [ 31%] Built target unit_test_name >> > >> > [ 32%] Built target unit_test_objectfactory >> > >> > [ 34%] Built target unit_test_property >> > >> > [ 34%] Built target unit_test_linalg >> > >> > [ 34%] Built target unit_test_optionshandler >> > >> > [ 35%] Built target unit_test_reducededge >> > >> > [ 35%] Built target unit_test_reducedgraph >> > >> > [ 37%] Built target unit_test_structureparameters >> > >> > [ 37%] Built target unit_test_thread >> > >> > [ 38%] Built target unit_test_tokenizer >> > >> > [ 38%] Built target unit_test_table >> > >> > [ 38%] Built target unit_test_random >> > >> > [ 40%] Built target unit_test_akimaspline >> > >> > [ 41%] Built target unit_test_linspline >> > >> > [ 43%] Built target unit_test_unitconverter >> > >> > [ 43%] Built target votca_property_manpage >> > >> > [ 43%] Built target unit_test_NDimVector >> > >> > [ 43%] Built target unit_test_eigenio_matrixmarket >> > >> > [ 43%] Linking CXX shared library libvotca_csg.dylib >> > >> > Undefined symbols for architecture arm64: >> > >> > "read_first_frame(gmx_output_env_t const*, t_trxstatus**, >> std::__1::__fs::filesystem::path const&, t_trxframe*, int)", referenced >> from: >> Hmm, this means something is wrong with the linking against gromacs? >> >> 0.) Do you need gromacs at all? - Otherwise switch it off. >> 1.) What gromacs version are you using? >> 2.) Did you build gromacs yourself? >> >> Christoph >> >> > >> > votca::csg::GMXTrajectoryReader::FirstFrame(votca::csg::Topology&) in >> gmxtrajectoryreader.cc.o >> > >> > "open_trx(std::__1::__fs::filesystem::path const&, char const*)", >> referenced from: >> > >> > votca::csg::GMXTrajectoryWriter::Open(std::__1::basic_string<char, >> std::__1::char_traits<char>, std::__1::allocator<char> >, bool) in >> gmxtrajectorywriter.cc.o >> > >> > "read_tpx(std::__1::__fs::filesystem::path const&, t_inputrec*, float >> (*) [3], int*, float (*) [3], float (*) [3], gmx_mtop_t*)", referenced >> from: >> > >> > >> votca::csg::GMXTopologyReader::ReadTopology(std::__1::basic_string<char, >> std::__1::char_traits<char>, std::__1::allocator<char> >, >> votca::csg::Topology&) in gmxtopologyreader.cc.o >> > >> > ld: symbol(s) not found for architecture arm64 >> > >> > clang: error: linker command failed with exit code 1 (use -v to see >> invocation) >> > >> > make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 >> > >> > make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 >> > >> > make: *** [all] Error 2 >> > >> > >> > >> > Glenn >> > >> > >> > Christoph Junghans 在 2023年4月24日 星期一上午11:51:51 [UTC+8] 的信中寫道： >> >> >> >> On Sun, Apr 23, 2023 at 19:38 zongyun tsai <[email protected]> >> wrote: >> >>> >> >>> Hello, >> >>> I encountered an Error message while when running the following >> command: >> >>> cmake --build builddirThe error shown in the terminal states that >> >>> >> >>> clang: error: linker command failed with exit code 1 (use -v to see >> invocation) >> >> >> >> can you post the lines above this error? >> >> >> >> Christoph >> >>> >> >>> make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 >> >>> >> >>> make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 >> >>> >> >>> make: *** [all] Error 2 >> >>> >> >>> Can you please suggest some ways to correct this error? >> >>> Thank you,Glenn >> >>> >> >>> >> >>> >> >>> >> >>> -- >> >>> Join us on Slack: https://join.slack.com/t/votca/signup >> >>> --- >> >>> You received this message because you are subscribed to the Google >> Groups "votca" group. >> >>> To unsubscribe from this group and stop receiving emails from it, >> send an email to [email protected]. >> >>> To view this discussion on the web visit >> https://groups.google.com/d/msgid/votca/60a4e6f3-51d2-49a2-ad60-5b6df3d064d2n%40googlegroups.com. >> >> >> >> >> -- >> >> Christoph Junghans >> >> Web: http://www.compphys.de >> > >> > -- >> > Join us on Slack: https://join.slack.com/t/votca/signup >> > --- >> > You received this message because you are subscribed to the Google >> Groups "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to [email protected]. >> > > To view this discussion on the web visit >> https://groups.google.com/d/msgid/votca/3db772b3-1c44-4dad-ae1c-edea78357445n%40googlegroups.com. >> >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> > -- > Join us on Slack: https://join.slack.com/t/votca/signup > --- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/2d28cdcd-9b3f-4d75-9dd8-f54ca7319e81n%40googlegroups.com > <https://groups.google.com/d/msgid/votca/2d28cdcd-9b3f-4d75-9dd8-f54ca7319e81n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- Christoph Junghans Web: http://www.compphys.de -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. 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