Dear Christoph, My gromacs version is 2023.1, and was built by myself using homebrew.
Glenn Christoph Junghans 在 2023年4月24日 星期一晚上11:40:24 [UTC+8] 的信中寫道： > On Sun, Apr 23, 2023 at 11:26 PM zongyun tsai <[email protected]> wrote: > > > > Dear Christoph > > > > > > (base) glenntsai@GlenndeAir ~ % cmake --build builddir --parallel 8 > > > > [ 1%] Built target csg_inverse_manpage > > > > [ 2%] Built target csg_call_build > > > > [ 2%] Built target csg_call_manpage > > > > [ 2%] Built target csg_inverse_build > > > > [ 2%] Built target votca_tools_manpages > > > > [ 2%] Built target votca_csg_manpages > > > > Current git revision is b533e3901 > > > > [ 2%] Built target gitversion > > > > [ 17%] Built target votca_tools > > > > [ 17%] Built target votca_property > > > > [ 17%] Built target unit_test_correlate > > > > [ 17%] Built target unit_test_cubicspline > > > > [ 19%] Built target unit_test_datacollection > > > > [ 19%] Built target unit_test_crosscorrelate > > > > [ 19%] Built target unit_test_calculator > > > > [ 20%] Built target unit_test_constants > > > > [ 20%] Built target unit_test_edge_base > > > > [ 22%] Built target unit_test_floatingpointcomparison > > > > [ 22%] Built target unit_test_filesystem > > > > [ 23%] Built target unit_test_elements > > > > [ 25%] Built target unit_test_graphalgorithm > > > > [ 26%] Built target unit_test_edgecontainer > > > > [ 26%] Built target unit_test_graph_base > > > > [ 26%] Built target unit_test_graphdistvisitor > > > > [ 26%] Built target unit_test_graph_df_visitor > > > > [ 26%] Built target unit_test_graphvisitor > > > > [ 28%] Built target unit_test_histogramnew > > > > [ 29%] Built target unit_test_graph_bf_visitor > > > > [ 31%] Built target unit_test_graphnode > > > > [ 31%] Built target unit_test_identity > > > > [ 31%] Built target unit_test_name > > > > [ 32%] Built target unit_test_objectfactory > > > > [ 34%] Built target unit_test_property > > > > [ 34%] Built target unit_test_linalg > > > > [ 34%] Built target unit_test_optionshandler > > > > [ 35%] Built target unit_test_reducededge > > > > [ 35%] Built target unit_test_reducedgraph > > > > [ 37%] Built target unit_test_structureparameters > > > > [ 37%] Built target unit_test_thread > > > > [ 38%] Built target unit_test_tokenizer > > > > [ 38%] Built target unit_test_table > > > > [ 38%] Built target unit_test_random > > > > [ 40%] Built target unit_test_akimaspline > > > > [ 41%] Built target unit_test_linspline > > > > [ 43%] Built target unit_test_unitconverter > > > > [ 43%] Built target votca_property_manpage > > > > [ 43%] Built target unit_test_NDimVector > > > > [ 43%] Built target unit_test_eigenio_matrixmarket > > > > [ 43%] Linking CXX shared library libvotca_csg.dylib > > > > Undefined symbols for architecture arm64: > > > > "read_first_frame(gmx_output_env_t const*, t_trxstatus**, > std::__1::__fs::filesystem::path const&, t_trxframe*, int)", referenced > from: > Hmm, this means something is wrong with the linking against gromacs? > > 0.) Do you need gromacs at all? - Otherwise switch it off. > 1.) What gromacs version are you using? > 2.) Did you build gromacs yourself? > > Christoph > > > > > votca::csg::GMXTrajectoryReader::FirstFrame(votca::csg::Topology&) in > gmxtrajectoryreader.cc.o > > > > "open_trx(std::__1::__fs::filesystem::path const&, char const*)", > referenced from: > > > > votca::csg::GMXTrajectoryWriter::Open(std::__1::basic_string<char, > std::__1::char_traits<char>, std::__1::allocator<char> >, bool) in > gmxtrajectorywriter.cc.o > > > > "read_tpx(std::__1::__fs::filesystem::path const&, t_inputrec*, float > (*) [3], int*, float (*) [3], float (*) [3], gmx_mtop_t*)", referenced from: > > > > votca::csg::GMXTopologyReader::ReadTopology(std::__1::basic_string<char, > std::__1::char_traits<char>, std::__1::allocator<char> >, > votca::csg::Topology&) in gmxtopologyreader.cc.o > > > > ld: symbol(s) not found for architecture arm64 > > > > clang: error: linker command failed with exit code 1 (use -v to see > invocation) > > > > make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 > > > > make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 > > > > make: *** [all] Error 2 > > > > > > > > Glenn > > > > > > Christoph Junghans 在 2023年4月24日 星期一上午11:51:51 [UTC+8] 的信中寫道： > >> > >> On Sun, Apr 23, 2023 at 19:38 zongyun tsai <[email protected]> wrote: > >>> > >>> Hello, > >>> I encountered an Error message while when running the following > command: > >>> cmake --build builddirThe error shown in the terminal states that > >>> > >>> clang: error: linker command failed with exit code 1 (use -v to see > invocation) > >> > >> can you post the lines above this error? > >> > >> Christoph > >>> > >>> make[2]: *** [csg/src/libcsg/libvotca_csg.2024.dylib] Error 1 > >>> > >>> make[1]: *** [csg/src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 > >>> > >>> make: *** [all] Error 2 > >>> > >>> Can you please suggest some ways to correct this error? > >>> Thank you,Glenn > >>> > >>> > >>> > >>> > >>> -- > >>> Join us on Slack: https://join.slack.com/t/votca/signup > >>> --- > >>> You received this message because you are subscribed to the Google > Groups "votca" group. > >>> To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > >>> To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/60a4e6f3-51d2-49a2-ad60-5b6df3d064d2n%40googlegroups.com > . > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > > > > -- > > Join us on Slack: https://join.slack.com/t/votca/signup > > --- > > You received this message because you are subscribed to the Google > Groups "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/3db772b3-1c44-4dad-ae1c-edea78357445n%40googlegroups.com > . > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. 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