This has been reported before ...  Maybe you've already fixed it;
If WSJT-X is configured to use the FlexRadio 6xxx rig interface method then at random intervals WSJT-X will cease to function correctly. Various different features cease to work each time and the CPU usage will increase to about 10 times normal.

I have discovered a method of causing the same symptoms to occur on demand which should assist in debugging this condition.  If the Flex has TX inhibit set to inhibit then toggling WSJT-X into transmit ( Tune off>on>off ) will duplicate the symptoms resulting from of the random event.  The random event appears to likely be the result of a delayed handshake (ID;) response from the radio.

This is from the SSDR CAT log  for the TCP port leading up to the event with TX inhibited..
19-02-06 14:28:05.123 TCP 26001 [sent]: ZZFI01;
2019-02-06 14:28:05.123 TCP 26001 [rcvd]: IF;
2019-02-06 14:28:05.125 TCP 26001 [sent]: IF000070740000010+0000000000090000000;
2019-02-06 14:28:35.788 TCP 26001 [rcvd]: TX;
2019-02-06 14:28:35.790 TCP 26001 [rcvd]: ID;
2019-02-06 14:28:35.791 TCP 26001 [sent]: ID909;
2019-02-06 14:28:36.646 TCP 26001 [rcvd]: RX;
2019-02-06 14:28:36.647 TCP 26001 [rcvd]: ID;
2019-02-06 14:28:37.246 TCP 26001 [rcvd]: RX;
2019-02-06 14:28:37.246 TCP 26001 [rcvd]: ID;
2019-02-06 14:28:37.717 TCP 26001 [sent]: ID909;
2019-02-06 14:28:37.718 TCP 26001 [sent]: ID909;

At this point the only recourse is to kill WSJT-X with the task manager and restart. I a normal situation the ID; following the first RX, receives an ID909; response in 100msec and the second RX is not sent.

AL, K0VM

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