I've added this information to <rdar://problem/7150340> which tracks the bug.

> On Oct 15, 2016, at 02:09, René J.V. Bertin <rjvber...@gmail.com> wrote:
> 
> Hi,
> 
> There was a discussion about focus stealing (away from XQuartz) a while back. 
> I don't know if that's been resolved in later versions that I'm currently 
> running, but I just noticed the following in my system.log after a background 
> process ("agent") bugged me to unlock a keychain:
> 
> Oct 15 11:05:56 Portia.local launchservicesd[61]: Application App:"XQuartz" 
> asn:0x0-2b02b pid:615 refs=7 @ 0x7ffee8d32ec0 tried to be brought forward, 
> but isn't in fPermittedFrontApps ( ( "LSApplication:0x0-0x52c52c pid=83685 
> "SecurityAgent"")), so denying. : LASSession.cp #1481 SetFrontApplication() 
> q=LSSession 100004/0x186a4 queue
> Oct 15 11:05:56 Portia.local WindowServer[140]: [cps/setfront] Failed setting 
> the front application to XQuartz, psn 0x0-0x2b02b, securitySessionID=0x186a4, 
> err=-13066
> 
> 
> That coincided nicely with a loss in xterm focus (though curiously the 
> menubar never changed from belonging to XQuartz AFAICT).
> 
> So the question is: how do we add XQuartz to the list of apps that are 
> allowed to bring themselves forward?
> 
> Cheers,
> René
> 
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