I found the root cause. It's purely a bug in the fts extension so
marking as Invalid for Zeitgeist itself.

** Changed in: zeitgeist-extensions
   Importance: Undecided => Critical

** Changed in: zeitgeist-extensions
       Status: New => Triaged

** Changed in: zeitgeist-extensions
     Assignee: (unassigned) => Mikkel Kamstrup Erlandsen (kamstrup)

** Changed in: zeitgeist
       Status: Triaged => Invalid

** Changed in: zeitgeist (Ubuntu)
       Status: Confirmed => Invalid

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You received this bug notification because you are a member of Zeitgeist
Extensions, which is the registrant for Zeitgeist Extensions.
https://bugs.launchpad.net/bugs/722762

Title:
  zeitgeist-daemon using ~100% of CPU

Status in Zeitgeist Framework:
  Invalid
Status in Zeitgeist Extensions:
  Triaged
Status in “zeitgeist” package in Ubuntu:
  Invalid
Status in “zeitgeist-extensions” package in Ubuntu:
  Confirmed

Bug description:
  I've tried restarting my computer, closing all applications, etc., but
  no matter what System Monitor tells me zeitgeist-daemon is using
  96-100% of the CPU on my i5 Sony Vaio laptop.

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https://bugs.launchpad.net/zeitgeist/+bug/722762/+subscriptions

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