Thanks Guido, Your reply is very helpful. I will download and check. You are right it is too early to expect labs using these chips.
Best regards, Neetu On Wed, Feb 20, 2013 at 4:26 PM, Hooiveld, Guido <guido.hooiv...@wur.nl>wrote: > Hi Neetu,**** > > I don’t fully understand. I just re-downloaded the file through the link I > mentioned before, and obtained a ZIP of 532MB. This ZIP contains 24 HuGene > 2.0 CEL files. Moreover, 24 HuGene 2.1 CEL files are included as well.**** > > Indeed, I also concluded that yet no ST2.0 arrays are available through > GEO. You have to realize that these 2.0 arrays are only on the market for > less than a year or so, and it takes some time for labs to start using > these chips, let alone to publish data that was generated. And it is only > at that moment that submitting data to GEO or ArrayExpress is required. ** > ** > > ** ** > > Regards,**** > > Guido**** > > ** ** > > *From:* aroma-affymetrix@googlegroups.com [mailto: > aroma-affymetrix@googlegroups.com] *On Behalf Of *Neetu Tandon > *Sent:* Wednesday, February 20, 2013 11:37 > *To:* aroma-affymetrix@googlegroups.com > *Subject:* Re: [aroma.affymetrix] Re: Gene 2.0 ST arrays**** > > ** ** > > Thanks Guido. but the site says ' Sample data is no longer provided in > individual files or in .CAB file format, and is thus not compatible with > Microarray Suite (MAS) or with versions of GCOS that do not have DTT > version 1.1 or higher installed.**** > > ** ** > > I will have to install many things to check if it is working properly. I > would prefer if i get a dataset listed in GEO or ArrayExpress for testing > my analysis method.**** > > Is it possible that none of the publicly available datasets use this > platform?**** > > ** ** > > Thanks and Regards,**** > > Neetu**** > > On Wed, Feb 20, 2013 at 2:29 PM, Hooiveld, Guido <guido.hooiv...@wur.nl> > wrote:**** > > Hi,**** > > You can obtain a set of sample HuGene 2.0 arrays directly from Affymetrix: > **** > > http://www.affymetrix.com/support/downloads/demo_data/human2_0.zip**** > > **** > > Regards,**** > > Guido**** > > **** > > *From:* aroma-affymetrix@googlegroups.com [mailto: > aroma-affymetrix@googlegroups.com] *On Behalf Of *Neetu Tandon > *Sent:* Wednesday, February 20, 2013 09:06 > *To:* aroma-affymetrix@googlegroups.com > *Subject:* [aroma.affymetrix] Re: Gene 2.0 ST arrays**** > > **** > > Hello all, **** > > It may be a little out of the current thread discussion, but i want to > test a dataset which uses HuGene-1_0-st and HuGene-2_0-st arrays for my > analysis tool in geneXplain platform.**** > > I am getting lot of datasets using HuGene-1_0-st in GEO but not > HuGene-2_0-st.**** > > Can anyone help me with this. How should i get publicly available dataset > using this platform. **** > > Is it also denoted by some other name.**** > > Any pointers in this regard is really appreciated.**** > > **** > > Thanks and Regards,**** > > Neetu**** > > > On Thursday, 6 December 2012 19:24:58 UTC+5:30, Maria Traka wrote:**** > > Hi guys,**** > > probably you've already given the answer somewhere but can i use > aroma.affymetrix to analyse Affymetrix 2.0 ST arrays (human and mouse)? > Presumably the same way as 1.0 arrays?**** > > **** > > Thanks in advance,**** > > Maria**** > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > **** > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > **** > > ** ** > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > **** > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. 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