Messages by Thread
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[aroma.affymetrix] Encountered ERROR while extracting chip effects
Rishi Das Roy
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[aroma.affymetrix] FIRMA alternate splicing
Sharada Yeluri
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[aroma.affymetrix] using custom CDF file in aroma.affymetrix
sanjana
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[aroma.affymetrix] Human Exon array : Problem in extracting Transcript level expression values
Manoj k
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[aroma.affymetrix] transcript and exon level analysis for detection of alternative splicings
jjspring OH
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[aroma.affymetrix] [process and display function in aroma.affymetrix]
jjspring OH
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[aroma.affymetrix] [A problem on fitting a log additive probe level model (PLM)
jjspring OH
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[aroma.affymetrix] Affymetrix Oncoscan library files
mbaudis
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[aroma.affymetrix] Errors on setup working directory
jjspring OH
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[aroma.affymetrix] Error when analyzing CEL files using process() function: "No permission to modify existing file: /probeData..."
Taylor Raborn
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[aroma.affymetrix] Discrepancy between .cdf and .cel files versions. GCRMA with custom probe file and negative controls
Marcin Jakub Kamiński
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[aroma.affymetrix] normalization running for long time (>3 weeks)
rafi4dd
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[aroma.affymetrix] NA values in aroma.affymetrix
mehdisadeqi65
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[aroma.affymetrix] Error: Cannot fit CRLMM model: Unsupported/unsafe chip type: DogSty06m520431P
Bart Broeckx
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[aroma.affymetrix] CYTOSCAN HD Analysis using PSCBS
Farhan Haq
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[aroma.affymetrix] Problem in MSCN : smooth.spline(sKK, lambda, ...)
Clara Tang
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[aroma.affymetrix] Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Clara Tang
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Re: [aroma.affymetrix] Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Henrik Bengtsson
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[aroma.affymetrix] Re: Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Clara Tang
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Re: [aroma.affymetrix] Re: Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Henrik Bengtsson
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[aroma.affymetrix] Re: Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Clara Tang
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Re: [aroma.affymetrix] Re: Problem in MSCN : Error in smooth.spline(sKK, lambda, ...)
Henrik Bengtsson
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[aroma.affymetrix] Doubts in PSCBS segments
Juan José Lozano Salvatella
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[aroma.affymetrix] R library Feature addition/requests
Dan Wlodarski
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[aroma.affymetrix] read in CEL.gz files
hr
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[aroma.affymetrix] CRMA v2 error with Mouse Diversity
eric . voirin
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[aroma.affymetrix] Re: a question in exporting cbs data
Andrew Smith
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[aroma.affymetrix] aroma.affymetrix v2.12.0 released
Henrik Bengtsson
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[aroma.affymetrix] Speeding up RmaBackgroundCorrection
Damian Plichta
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[aroma.affymetrix] passing parameters to glad()
Hans-Ulrich
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[aroma.affymetrix] Error in readCelHeader(pathname) : Argument 'filename' should be a single file ..
bibhubioinfo1
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[aroma.affymetrix] "Cannot fit normalization function to enzyme" error
Z. Ding
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[aroma.affymetrix] Construct cdf file from pgf, clf and gene mapping file
Guilherme Rocha
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[aroma.affymetrix] na31 x na33
Fernando Andrade
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[aroma.affymetrix] Basic manual
Fernando Andrade
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[aroma.affymetrix] CRMAv2 and Mapping250K_Nsp arrays
Hans-Ulrich
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[aroma.affymetrix] gene-centric CDF for HT HG U133A arrays (TCGA GBM data)
BJ Chen
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[aroma.affymetrix] Use Existing FIRMA model on new data.
Sam Danziger
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Re: [aroma.affymetrix] Hypersegmentation from "Paired total copy-number analysis" using CRMAv2 with GWSNP6
Henrik Bengtsson
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[aroma.affymetrix] smoothing after CRMAv2 and before CBS?
Emilie
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[aroma.affymetrix] Extract RefSeq annotation from custom CDF
Stacy Hung
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[aroma.affymetrix] CDF file for Human Gene 1.1 st array
jerrycholo
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[aroma.affymetrix] aroma.affymetrix v2.11.0 released
Henrik Bengtsson
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[aroma.affymetrix] Germline CNV removal - seperate segmentation for normal & tumour??
helping432
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[aroma.affymetrix] ATH1 array?
Ann Loraine
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[aroma.affymetrix] Errors while load CEL files using AffymetrixCelSet$byName
fenghuijuan0401
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[aroma.affymetrix] Can't Load CEL files
anovak
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[aroma.affymetrix] SNP 6.0, how to exclude Y chromosome from analysis
Jiří Voller
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[aroma.affymetrix] how to get differential region after MatSmoothing?
zhouzaiwei
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[aroma.affymetrix] external normalization?
Koray Doğan Kaya
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[aroma.affymetrix] aroma.affymetrix v2.10.0 released
Henrik Bengtsson
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Re: [aroma.affymetrix] Chromosome Explorer truncated chr9 image plot
Henrik Bengtsson
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[aroma.affymetrix] Error in estimateKappa() from PSCBS
Oscar Rueda
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[aroma.affymetrix] Raw copy numbers calculation using common reference instead of average of all samples
sean nj
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[aroma.affymetrix] Fail to load package sfit in R 3
Einar Andreas Rødland
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[aroma.affymetrix] Aroma for ~4000 microarrays
Ryan Chow
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[aroma.affymetrix] Error in UseMethod("getChecksum") when processing Affymetrix Human Gene 1.0 ST arrays
rangerq
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[aroma.affymetrix] which version of Human build used for 500K, SNP5 and SNP6 in aroma?
Wei Tang
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[aroma.affymetrix] merge affymetrix microarray data sets from same platform
shangzhong Li
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[aroma.affymetrix] Exporting B-allele Frequencies and Log R ratios
Marijana Vujkovic
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[aroma.affymetrix] 500K by doCRMAv2
Wei Tang