Hi Philip,
Thank you for your reply. I am using MATLAB to analyze the gene expression data generated by "Affymetrix Human Gene 1.1-ST Array". When I ran this function “affygcrma”, I got following error: Warning: The ChipType (HuGene-1_1-st-v1) of CEL file ASFREYT_HuGene1.1ST_C04_2.CEL does not match the ChipType (HuGene-1_1-st-v1_ascii) of library file HuGene-1_1-st-v1_ascii.CDF. > In celintensityread at 255 In affygcrma at 140 Thanks, Jerry On Friday, November 1, 2013 3:20:09 PM UTC-7, philipg wrote: > Hi Jerry, > > I read your message regarding the binary CDF that you downloaded from > NuGO_R.html (I am responsible for these packages and I am the maintainer of > NuGO_R.html). Unfortunately, you are not explaining what exactly the > problems are that you encounter? Can you please explain to me what you are > trying to do and in what kind of problems you run? I'll try to give you a > hand then. > > Regards, > > Philip de Groot > Wageningen University > > > 2013/11/1 <jerry...@gmail.com <javascript:>> > >> Hello, >> >> >> To analyze Human Gene 1.1 st array, I used these CDF files, which >> are: HuGene-1_1-st-v1_ascii.CDF (from affymetrix) and (ii) >> HuGene-1_1-st-v1,byTranscript-fsetid,pd.hugene.1.1.st.v1.cdf (from * >> http://nmg-r.bioinformatics.nl/NuGO_R.html*<http://nmg-r.bioinformatics.nl/NuGO_R.html> >> ). Unfortunately, I am getting errors that stop me to move forward in >> my work. Please let me know if there is another website to download this >> CDF file. >> >> Thanks, >> >> Jerry >> >> -- >> -- >> When reporting problems on aroma.affymetrix, make sure 1) to run the >> latest version of the package, 2) to report the output of sessionInfo() and >> traceback(), and 3) to post a complete code example. >> >> >> You received this message because you are subscribed to the Google Groups >> "aroma.affymetrix" group with website http://www.aroma-project.org/. >> To post to this group, send email to >> aroma-af...@googlegroups.com<javascript:> >> To unsubscribe and other options, go to >> http://www.aroma-project.org/forum/ >> >> --- >> You received this message because you are subscribed to the Google Groups >> "aroma.affymetrix" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to aroma-affymetr...@googlegroups.com <javascript:>. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
