I can reproduce this; > csv <- AffymetrixNetAffxCsvFile$byChipType(chipType) Error in grep(pattern, basename(files0)) : invalid 'pattern' argument
I'll investigate. /Henrik On Mon, Dec 15, 2014 at 5:51 AM, Chengyu Liu <chengyu.liu...@gmail.com> wrote: > Hi, > > I am trying to read annotation file of CytoScanHD_Array, but somehow it > could not locate it. > > I followed the tutorial in the web > http://aroma-project.org/setup/annotationData/. I am using NetAffx > Annotation Files (I could not find CDF file) . > I created folder annotationData/chipTypes/CytoScanHD_Array/NetAffx/ and put > annotation file CytoScanHD_Array_annot.csv there. > > I ran AffymetrixNetAffxCsvFile$byChipType("CytoScanHD_Array") at parent > directory of annotationData. > > It gave error "Error in grep(pattern, basename(files0)) : invalid 'pattern' > argument" > > Does anyone know what was wrong ? > > Br, > C.Y > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
